Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_D10
         (1230 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.19c |||queuine tRNA-ribosyltransferase|Schizosaccharomy...    37   0.005
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    27   7.0  

>SPAC1687.19c |||queuine tRNA-ribosyltransferase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 404

 Score = 37.1 bits (82), Expect = 0.005
 Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = -3

Query: 1042 LTCNLCKLQMRXMRTMRXNIENXTLPAFVXXFVNEVY--PNGQYPTWVVNSLSSVGINL 872
            +T +    Q++ MR MR +I     P+FV  F +E        YP+W V++L  V I+L
Sbjct: 344  MTIHNVHFQLQLMRDMRESIIKDEFPSFVKNFFHEWNHGDKSNYPSWAVDALRMVNIDL 402


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +1

Query: 13  PTRXFLTTSARTXLHRSKKSFSKLFTHVVSCLVSVRXKNQM-VFSFPSRV 159
           P + F T SA + +  SKK  +K+    V C  S+    ++ + SFPS V
Sbjct: 131 PRQSFYTDSATSIVQLSKKYRNKIKFKSVDCASSLEKCEEIGINSFPSLV 180


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,370,504
Number of Sequences: 5004
Number of extensions: 51652
Number of successful extensions: 104
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 667380970
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)