Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_D09
         (1269 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032652-4|CAB63398.1|  486|Caenorhabditis elegans Hypothetical ...    31   2.3  
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    30   4.0  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    30   4.0  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    30   4.0  
U97002-4|AAB52267.1|  630|Caenorhabditis elegans Hypothetical pr...    29   9.3  

>AL032652-4|CAB63398.1|  486|Caenorhabditis elegans Hypothetical
            protein Y63D3A.5 protein.
          Length = 486

 Score = 30.7 bits (66), Expect = 2.3
 Identities = 20/65 (30%), Positives = 22/65 (33%)
 Frame = +3

Query: 954  PPXKKXXXPXXXGGXXGFXXPXGGXXGXPXXXGKPXXKXFXXRXXXGXNPXXGGXGGXFX 1133
            PP      P   GG  G+  P  G  G P   G P           G  P   G  G + 
Sbjct: 392  PPPSAFGAPQGPGGPGGYGPPPPGGPGAPGSYGPPQG------GPGGFGPPPPGGPGAY- 444

Query: 1134 XGPPP 1148
             GPPP
Sbjct: 445  -GPPP 448



 Score = 28.7 bits (61), Expect = 9.3
 Identities = 25/76 (32%), Positives = 25/76 (32%), Gaps = 4/76 (5%)
 Frame = -3

Query: 415 GPFFXXPXXFXPWAGXXXPFXFXAPGXXGGPXXXFXPXPG--XXPXDXXXPV--RGFFXP 248
           G F   P    P A    P  F AP   GGP     P PG    P     P    G F P
Sbjct: 376 GNFAPPPQSGPPGAFAPPPSAFGAPQGPGGPGGYGPPPPGGPGAPGSYGPPQGGPGGFGP 435

Query: 247 XPXXXRXGXGGXXXPP 200
            P     G G    PP
Sbjct: 436 PPP---GGPGAYGPPP 448


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
            protein 1, isoformb protein.
          Length = 1437

 Score = 29.9 bits (64), Expect = 4.0
 Identities = 19/71 (26%), Positives = 19/71 (26%)
 Frame = -2

Query: 1124 PPXPXXXXVXAXXGPXXKXFXPGFPPXXGXTXXPPXGXXKXXXPPPXXRGXXFFXXGXXX 945
            PP P         GP       G PP  G    PP        PPP      F       
Sbjct: 728  PPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPP 787

Query: 944  XPPKXKXPFXP 912
             PP    P  P
Sbjct: 788  PPPGMFAPMAP 798


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
            protein 1, isoforma protein.
          Length = 1435

 Score = 29.9 bits (64), Expect = 4.0
 Identities = 19/71 (26%), Positives = 19/71 (26%)
 Frame = -2

Query: 1124 PPXPXXXXVXAXXGPXXKXFXPGFPPXXGXTXXPPXGXXKXXXPPPXXRGXXFFXXGXXX 945
            PP P         GP       G PP  G    PP        PPP      F       
Sbjct: 728  PPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPP 787

Query: 944  XPPKXKXPFXP 912
             PP    P  P
Sbjct: 788  PPPGMFAPMAP 798


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 29.9 bits (64), Expect = 4.0
 Identities = 19/71 (26%), Positives = 19/71 (26%)
 Frame = -2

Query: 1124 PPXPXXXXVXAXXGPXXKXFXPGFPPXXGXTXXPPXGXXKXXXPPPXXRGXXFFXXGXXX 945
            PP P         GP       G PP  G    PP        PPP      F       
Sbjct: 311  PPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPP 370

Query: 944  XPPKXKXPFXP 912
             PP    P  P
Sbjct: 371  PPPGMFAPMAP 381


>U97002-4|AAB52267.1|  630|Caenorhabditis elegans Hypothetical protein
            K09H11.4 protein.
          Length = 630

 Score = 28.7 bits (61), Expect = 9.3
 Identities = 15/42 (35%), Positives = 15/42 (35%)
 Frame = -3

Query: 1138 PFXKXPPXPPFXGFXPFXXLXXKXFXXGFPXFXGXPXXPPXG 1013
            PF   P  P F GF PF          G   F G P   P G
Sbjct: 396  PFPAFPKFPSFGGFQPFQPDFPTRRFGGNGGFAGGPWNSPGG 437


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,588,497
Number of Sequences: 27780
Number of extensions: 240051
Number of successful extensions: 539
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 481
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3537281262
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)