Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP26_F_D08
(1227 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyce... 29 1.00
SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase |Schizosaccharom... 29 1.3
SPAC6B12.11 |drc1|sld1|DNA replication protein Drc1|Schizosaccha... 27 4.0
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 27 5.3
SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi... 27 7.0
SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun... 27 7.0
SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit Mcm5|Schi... 26 9.3
SPBC2G5.02c |||CK2 family regulatory subunit |Schizosaccharomyce... 26 9.3
>SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 760
Score = 29.5 bits (63), Expect = 1.00
Identities = 29/108 (26%), Positives = 46/108 (42%)
Frame = +1
Query: 607 VYGIGDRRSLTPRLLYGGIYKHLGETMKLLWTGDLKMNTVHVRDVCRAIWTLGTSPQANK 786
+YG D + LL GG+ K LG+ M++ GD+ + V ++ S A +
Sbjct: 365 IYGHEDVKKALLLLLVGGVTKELGDGMRI--RGDINICLTGDPGVAKSQLLKYISKVAPR 422
Query: 787 QIYNLVDEGNSTQGTLAELVSDIFKINHDYYGTAISTLAKNDIASVAE 930
+Y G+S G A ++ D G A+ LA N I + E
Sbjct: 423 GVYT-TGRGSSGVGLTAAVMRDPVTDEMVLEGGAL-VLADNGICCIDE 468
>SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 365
Score = 29.1 bits (62), Expect = 1.3
Identities = 20/70 (28%), Positives = 27/70 (38%), Gaps = 2/70 (2%)
Frame = +1
Query: 64 TGDH--LKPRVLILGGCGFIGRNLVXYLIRNDLVSGLRVVDKXPPQLAFLNPTHSKTFED 237
TGD+ K LI GG GFIG N + Y + +DK + SK
Sbjct: 2 TGDYKEYKGYALITGGAGFIGSNFLDYAVDKYPDFHFTCIDKLSYVSNYTTVFLSKVLNQ 61
Query: 238 PRVEYKSANL 267
P + +L
Sbjct: 62 PNFRFLEMDL 71
>SPAC6B12.11 |drc1|sld1|DNA replication protein
Drc1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 337
Score = 27.5 bits (58), Expect = 4.0
Identities = 14/57 (24%), Positives = 29/57 (50%)
Frame = +1
Query: 760 LGTSPQANKQIYNLVDEGNSTQGTLAELVSDIFKINHDYYGTAISTLAKNDIASVAE 930
LG +PQ ++++ NL+++ + + + +SDI + T I T + VA+
Sbjct: 108 LGPTPQLSRRVLNLLEDMSPIADSHVDQISDIKHNTSEISSTMIPTTPSKNPEPVAQ 164
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 27.1 bits (57), Expect = 5.3
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Frame = +1
Query: 769 SPQANKQIYNL-VDEGNSTQGTLAELVSDIFKINHDYYGTAISTLAKNDIASVAEEANDK 945
S +N Q +N+ + G T T++ + + HD AIS ++ ++ A EA
Sbjct: 46 SRDSNSQTHNISFNIGTPTAPTVSTGSPAVASL-HDQVAAAISPRNRSLTSTSAVEAVPA 104
Query: 946 HLTAWADICRKYSLQHTPL 1002
++A+ + C KY ++ L
Sbjct: 105 SISAYDEFCSKYLSKYMEL 123
>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 893
Score = 26.6 bits (56), Expect = 7.0
Identities = 17/51 (33%), Positives = 21/51 (41%)
Frame = +1
Query: 622 DRRSLTPRLLYGGIYKHLGETMKLLWTGDLKMNTVHVRDVCRAIWTLGTSP 774
D R +T R G + E KL+W D KM HV + W L P
Sbjct: 507 DSRKITYRK--PGFLESFVEHNKLMWLKDRKMGDGHVYESSALTWPLLLGP 555
>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1165
Score = 26.6 bits (56), Expect = 7.0
Identities = 24/100 (24%), Positives = 46/100 (46%), Gaps = 2/100 (2%)
Frame = +1
Query: 373 VYAEGIVTLSLNVAKHCARMKVPRLVEISS-GQMCSNDKPQKEDCSIDPWTIEGRMKSKV 549
+ A G++T + + ++ PR ++ S G +C++D P+ E C G +K+
Sbjct: 475 ISALGMMTRITSQFEKTRKVSGPRSLQASQFGMLCTSDTPEGEAC--------GLVKNLA 526
Query: 550 EQELKNMEDLNYTIIRPAIVYGIGDRRSLTPRLLYG-GIY 666
++ II+ A +GI D ++ R L+ G Y
Sbjct: 527 LMTHITTDEEEEPIIKLAYAFGIEDIHVISGRELHSHGTY 566
>SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit
Mcm5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 26.2 bits (55), Expect = 9.3
Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 12/76 (15%)
Frame = +1
Query: 385 GIVTLSLNV-AKH--CARMKVPRLVEISSG-------QMCSND--KPQKEDCSIDPWTIE 528
G TLS A H C + R+++IS G ++C +K+DC +DP+ I+
Sbjct: 152 GASTLSCRATALHLVCRNCRATRILQISGGFSGVQLPRVCEAPVLDGEKKDCPMDPFIID 211
Query: 529 GRMKSKVEQELKNMED 576
+ ++Q++ +++
Sbjct: 212 HSKSTFIDQQVLKLQE 227
>SPBC2G5.02c |||CK2 family regulatory subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 254
Score = 26.2 bits (55), Expect = 9.3
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = -1
Query: 897 SRNSGSIVIMIDFEYIRDELGQCTLS-AVPFVNQVIDLLVGLRTGPES 757
SR + + ++I D L+ AVPF N+ +DL++ RT P++
Sbjct: 47 SRPGREYFVEVKEDFIEDLFNLTGLNLAVPFYNEALDLILD-RTAPDT 93
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,395,825
Number of Sequences: 5004
Number of extensions: 92323
Number of successful extensions: 264
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 254
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 264
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 665388788
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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