Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_D08
         (1227 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    27   0.44 
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             27   0.44 
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            24   2.4  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   5.4  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 26.6 bits (56), Expect = 0.44
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +3

Query: 324 AGSELCERNSRRSDRGGLCGRNRHPQPERGQALRQDEGTKTGRDLK 461
           +GS +  RNS RS+  G CGR         +AL Q    +  ++ K
Sbjct: 30  SGSSI-SRNSNRSESSGYCGRRPSTFGSSNEALPQPISKRKDKEHK 74


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 26.6 bits (56), Expect = 0.44
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +3

Query: 324 AGSELCERNSRRSDRGGLCGRNRHPQPERGQALRQDEGTKTGRDLK 461
           +GS +  RNS RS+  G CGR         +AL Q    +  ++ K
Sbjct: 30  SGSSI-SRNSNRSESSGYCGRRPSTFGSSNEALPQPISKRKDKEHK 74


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 18/53 (33%), Positives = 23/53 (43%)
 Frame = +1

Query: 772 PQANKQIYNLVDEGNSTQGTLAELVSDIFKINHDYYGTAISTLAKNDIASVAE 930
           P   + IY+ V   N T G   +    IF+   DY   AIS    N I +V E
Sbjct: 214 PSDLRTIYSRVRNLNRTHGFPNDAQPYIFQEVIDYGNEAISKREYNGIGAVIE 266


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +1

Query: 406 NVAKHCARMKVPRLVEISSGQMCSNDKPQKED 501
           N+  H A   +PR+  + + +  ++D+P K D
Sbjct: 420 NIRCHVAGEPLPRVQWLKNDEALNHDQPDKYD 451


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 303,787
Number of Sequences: 438
Number of extensions: 6913
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 41781924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)