Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_D07
         (1222 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPYUG7.05 |||delta-1-pyrroline-5-carboxylate reductase |Schizo...   145   1e-35
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    28   2.3  
SPAC13F5.03c |||glycerol dehydrogenase |Schizosaccharomyces pomb...    26   9.2  

>SPAPYUG7.05 |||delta-1-pyrroline-5-carboxylate reductase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 282

 Score =  145 bits (351), Expect = 1e-35
 Identities = 73/180 (40%), Positives = 106/180 (58%)
 Frame = +2

Query: 344 LKEIKNLPSAKNKLFISVAMGITIATVESNLPSEARVIRVMPNTPALVKEGAAAFSRGTK 523
           L   K   + K KL +S+  G TI++++S L    RVIR+MPNT + ++E  +    G  
Sbjct: 94  LNSPKMKEALKGKLILSILAGKTISSLQSMLDESTRVIRIMPNTASRIRESMSVICPGPN 153

Query: 524 ATAEDAQLTSQLFKAVGTCDEVPEYQMDAITALSGSGPAYVYMLIESLADGGVRCGLPRD 703
           AT ED +    +F  +G   ++PE  +DA TA+ GSGPA+V  +IE++ DGGV  G+P  
Sbjct: 154 ATEEDIKFAEWVFNGIGRSMKLPEKLIDAATAVCGSGPAFVATMIEAMTDGGVMMGIPFP 213

Query: 704 LALRLAAQTTLGSAAMVKTGDHPAMLKDNVTSPAGSTAEGTYHLEKNGFRSAIIGAVSAA 883
            A  LAAQT +G+  MV  G HPAM++++V++PAG T  G   LE    RS I   +  A
Sbjct: 214 QAQELAAQTMVGTGRMVLQGQHPAMIRNDVSTPAGCTISGLLALEDGKIRSTIARGIEQA 273


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1811

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +3

Query: 12   SYRESXRFRVSGRTLWSLRVTYFTSENYH 98
            SY    R R+   ++WSL  TYFT  + H
Sbjct: 1201 SYYNMRRIRMEWSSIWSLLGTYFTQVSCH 1229


>SPAC13F5.03c |||glycerol dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 450

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +2

Query: 509 SRGTKATAEDAQLTSQLFKAVGTCDEVPEYQMDAITALSGSG 634
           +R  K T E   L++ L    G C E  E  ++A T +SG G
Sbjct: 264 ARACKDTLEKYALSAILSNTRGVCTEAFENVVEANTLMSGLG 305


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,068,185
Number of Sequences: 5004
Number of extensions: 85402
Number of successful extensions: 218
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 661404424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)