Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP26_F_D07
(1222 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0174 - 41711220-41711408,41711483-41711669,41711690-417118... 162 6e-40
09_04_0212 + 15698363-15698615,15698699-15700011,15700323-15700337 30 4.2
05_01_0365 + 2865496-2865588,2865673-2865856,2866791-2866948,286... 29 5.6
10_08_0905 - 21469688-21469933,21470175-21470499,21470586-214708... 29 7.4
08_02_1149 + 24706429-24708105 29 9.8
08_02_0881 - 22216657-22216780,22216918-22217056,22217120-222171... 29 9.8
07_01_0305 - 2181727-2184793,2185635-2185945 29 9.8
>01_07_0174 -
41711220-41711408,41711483-41711669,41711690-41711810,
41712194-41712266,41712494-41712585,41712900-41712948,
41713189-41713413
Length = 311
Score = 162 bits (393), Expect = 6e-40
Identities = 113/293 (38%), Positives = 146/293 (49%), Gaps = 28/293 (9%)
Frame = +2
Query: 104 EAMKIGFIGGGRLAFALANGFISAGLAKPDEITASCHPSDVASAKAFQGLGATALFENXX 283
E ++GFIG G LA ++A G ++G+ I + H A+AF +GA L N
Sbjct: 17 EVFRLGFIGPGNLAESIARGVAASGVLPATAIRTAPHRRP-ERAEAFSSIGAHILETNAQ 75
Query: 284 XXXXXXXXXXXXXXXXXXPALKEIKNLPSAKNKLFISVAMGITIATVESNLPSEARVIRV 463
L E+K L S + KL +S+A GI + ++ R IRV
Sbjct: 76 VVDDSDVIVISVKPQIVRQVLVELKPLLS-EEKLLVSIAAGIKMEDLQG-WSGHRRFIRV 133
Query: 464 MPNTPALVKEGAAAFSRGTKATAEDAQLTSQLFKA---VGTCDEV--------------- 589
MPNTP+ V + A+ G AT D LF A V T +E
Sbjct: 134 MPNTPSAVGQAASVMCLGEMATENDENRVRSLFSAIGKVWTAEEKYFDAVTGLRSFLEKL 193
Query: 590 --PEYQM-------DAITALSGSGPAYVYMLIESLADGGVRCGLPRDLALRLAAQTTLGS 742
+Y M + SGSGPAY+++ IE++ADGGV GLPRDLAL LA+QT LG+
Sbjct: 194 HWKQYVMILRINMYSHLFEYSGSGPAYIFLAIEAMADGGVAAGLPRDLALGLASQTVLGA 253
Query: 743 AAMV-KTGDHPAMLKDNVTSPAGSTAEGTYHLEKNGFRSAIIGAVSAAVDRCK 898
A MV KTG HP LKD VTSPAG+T G LEK FR +I AV AA RC+
Sbjct: 254 ATMVNKTGKHPGQLKDMVTSPAGTTITGIQELEKGAFRGTLINAVVAATKRCR 306
>09_04_0212 + 15698363-15698615,15698699-15700011,15700323-15700337
Length = 526
Score = 29.9 bits (64), Expect = 4.2
Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 4/90 (4%)
Frame = +2
Query: 440 SEARVIRVMPNTPALVKEGAAAFSRGTKATAEDAQLTSQLFKAVGTCDEVPEYQMDAITA 619
+E V+ +P++ G F+R + A A + L + G VP YQ D
Sbjct: 116 AEVPVVSFSATSPSVSPGGGRFFARAALSDAAQAGAIAALARLFGWRRVVPVYQDD---- 171
Query: 620 LSGSGPAYVYMLIESL-ADGG---VRCGLP 697
G A+V L+++L A+G RC LP
Sbjct: 172 --DYGAAFVPFLVDALTAEGSEVPYRCALP 199
>05_01_0365 +
2865496-2865588,2865673-2865856,2866791-2866948,
2867035-2867247,2867330-2867560
Length = 292
Score = 29.5 bits (63), Expect = 5.6
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Frame = +2
Query: 485 VKEGAAAFSRGTKATAEDAQLTSQLFKAVGTCD--EVPEYQMDAITALSGSGPAYVYMLI 658
+K GAA GT + ++ + + ++ VG D EV + G GP V ML+
Sbjct: 222 IKPGAAVIDVGTNSISDPTRKSG--YRLVGDVDFAEVSKVAGHLTPVPGGVGPMTVAMLL 279
Query: 659 ESLADGGVR 685
++ DG R
Sbjct: 280 KNTVDGAKR 288
>10_08_0905 -
21469688-21469933,21470175-21470499,21470586-21470833,
21471061-21471315
Length = 357
Score = 29.1 bits (62), Expect = 7.4
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = +2
Query: 437 PSEARVIRVMPNTPALVKEGAAAFSRGTKATAEDAQLTSQLFKAVGTCDE 586
PS++R +R P +PA ++ A+S TK+ A L + KAVG E
Sbjct: 151 PSDSRDLRFWPTSPASFRQSIDAYSSETKSLA--LCLFEFMAKAVGAKPE 198
>08_02_1149 + 24706429-24708105
Length = 558
Score = 28.7 bits (61), Expect = 9.8
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -1
Query: 316 RYYHHLRSFHHGYVFK 269
RYYH L+S H G +FK
Sbjct: 154 RYYHFLKSHHDGMIFK 169
>08_02_0881 -
22216657-22216780,22216918-22217056,22217120-22217192,
22218260-22218357,22218516-22218542,22218625-22218715,
22218819-22218900,22219983-22220098
Length = 249
Score = 28.7 bits (61), Expect = 9.8
Identities = 14/52 (26%), Positives = 25/52 (48%)
Frame = -1
Query: 457 NHTSLRRQIRFDCSDSNSHGNGNEELILCRGQVFYLFQSGYHDIGLDRYYHH 302
+H ++ R S +HG G + + RG ++ +F+ Y D L + HH
Sbjct: 82 DHENIIRLKEIVVSPGTAHGAGGSDDYMYRGDIYMVFE--YMDHDLKKVLHH 131
>07_01_0305 - 2181727-2184793,2185635-2185945
Length = 1125
Score = 28.7 bits (61), Expect = 9.8
Identities = 25/73 (34%), Positives = 31/73 (42%), Gaps = 6/73 (8%)
Frame = +2
Query: 578 CDEVPEYQMDAITALSGSGPAYVYMLIESLADGGVRCGLPR------DLALRLAAQTTLG 739
C+ P+ M TA S L+ESL G+RCGLPR LA T LG
Sbjct: 896 CENFPDMNMAEPTAFSYP------KLLESLNICGIRCGLPRWIKELSRLAKLTLCDTHLG 949
Query: 740 SAAMVKTGDHPAM 778
M G+ A+
Sbjct: 950 EQDMAVVGNLKAL 962
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,888,275
Number of Sequences: 37544
Number of extensions: 635121
Number of successful extensions: 1469
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1468
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3747967944
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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