Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_D07
         (1222 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      25   1.3  
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    24   2.3  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    24   2.3  
EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    23   4.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   5.4  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 25.0 bits (52), Expect = 1.3
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 55  CGVCA*RTLRQKITINRSYEDRIYRRRQACVC 150
           C VC  +TL  K+T+ R  E + ++   + VC
Sbjct: 374 CDVCG-KTLSTKLTLKRHKEQQHFQPLNSAVC 404


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -3

Query: 371 PRAGFLSLSERVPRHRA*QILSP-PQIFPP 285
           P   ++S+ E++PR R    L+P P+  PP
Sbjct: 131 PMGPWISIQEQIPRFRHIGPLTPFPRFIPP 160


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -3

Query: 371 PRAGFLSLSERVPRHRA*QILSP-PQIFPP 285
           P   ++S+ E++PR R    L+P P+  PP
Sbjct: 372 PMGPWISIQEQIPRFRHIGPLTPFPRFIPP 401


>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 785 DNVTSPAGSTAEGTYHLEKNGFR 853
           D+ T+P G     TY  ++NGF+
Sbjct: 75  DSYTAPDGQQVSITYVADENGFQ 97


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = -1

Query: 166  KAVRQSKRKPAAAYKSDLHSFY*W*FSDVKYVTRKLHSVRPLTRNLKDS 20
            +AVR  +R   + +++   S+Y    S ++Y  ++ H +RP  R+ K S
Sbjct: 1050 EAVRAVQRGEMSVHRAG--SYYGVPHSTLEYKVKERHLMRPRKRDQKQS 1096


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 280,024
Number of Sequences: 438
Number of extensions: 6588
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 41541798
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)