Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP26_F_D06
(1201 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po... 34 0.034
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa... 33 0.079
SPBC6B1.03c |||Pal1 family protein|Schizosaccharomyces pombe|chr... 32 0.18
SPBC30B4.03c |||conserved protein |Schizosaccharomyces pombe|chr... 29 1.3
SPAC20G8.01 |cdc17||ATP-dependent DNA ligase Cdc17|Schizosacchar... 28 3.0
SPBC19G7.06 |mbx1||MADS-box transcription factor Mbx1|Schizosacc... 27 5.2
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr... 27 5.2
SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9 |Schizos... 27 5.2
SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomy... 27 5.2
SPCC4B3.07 |||nuclear pore associated protein|Schizosaccharomyce... 27 5.2
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|... 27 5.2
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 27 5.2
SPAC8E11.05c |||conserved fungal protein|Schizosaccharomyces pom... 27 6.8
SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces... 27 6.8
SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity fac... 27 6.8
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ... 26 9.0
SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4 |Schizosac... 26 9.0
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb... 26 9.0
SPBC3B8.09 |||U3 snoRNP-associated protein Utp3 |Schizosaccharom... 26 9.0
>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 658
Score = 34.3 bits (75), Expect = 0.034
Identities = 37/155 (23%), Positives = 67/155 (43%), Gaps = 9/155 (5%)
Frame = +1
Query: 490 IVSQDKVAFTNDNGNLYQSKESHSENSGTSTQDTVP--KIIYVQTDGL----QDNQLYQV 651
+ S+ K N + QS+ +S+NSG + K ++ + L Q L
Sbjct: 433 VESEAKNLMNKTNYSANQSQNGNSQNSGNPVSQAIDLAKSLFQNRNLLTKLAQSGVLTNA 492
Query: 652 A-GSSGDSIIMSRAQTNKGPLYYIVKPNNFNAANNLEQSTILPQTSALNNDASYIIRYTN 828
A GSSG + + A + + NN N++NN S S +N+ S + + ++
Sbjct: 493 AQGSSGG--LSAAAVSGLIGSFMGSSSNNSNSSNN--NSNTSNNNSNTSNNESMVSKLSS 548
Query: 829 KQ--PNEFSNVPKNNDDTSNMNFGSQNSNHQSTHN 927
+ F NN++ +N N G+ N+N+ +N
Sbjct: 549 LSGMASSFLGSSGNNNNNNNSNSGNYNNNNSGNNN 583
Score = 30.3 bits (65), Expect = 0.56
Identities = 27/128 (21%), Positives = 53/128 (41%)
Frame = +1
Query: 538 YQSKESHSENSGTSTQDTVPKIIYVQTDGLQDNQLYQVAGSSGDSIIMSRAQTNKGPLYY 717
+ S++ NS + +T + ++L ++G + S + S N
Sbjct: 512 FMGSSSNNSNSSNNNSNTSNNNSNTSNNESMVSKLSSLSGMAS-SFLGSSGNNNNNNNSN 570
Query: 718 IVKPNNFNAANNLEQSTILPQTSALNNDASYIIRYTNKQPNEFSNVPKNNDDTSNMNFGS 897
NN N+ NN +Q +S+L AS + ++ N+ + NN + N N +
Sbjct: 571 SGNYNNNNSGNNNQQHQ--QSSSSLQGLASSFLNSSSGNSNKQNYNNNNNQNYGNNNNQN 628
Query: 898 QNSNHQST 921
N+N+ S+
Sbjct: 629 YNNNNNSS 636
>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 639
Score = 33.1 bits (72), Expect = 0.079
Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 4/102 (3%)
Frame = +1
Query: 682 SRAQTNKGPLYYIVKPNNFNAANNLEQSTILPQTSALNNDASYIIR-YTNKQPNEFS--- 849
+R + G YY V P+ ++ + T P S LN + ++R K PN S
Sbjct: 247 TRKDSGNGATYYKVIPDP-----SVNKDT--PTESDLNRLKADLLRAQLKKDPNYESLER 299
Query: 850 NVPKNNDDTSNMNFGSQNSNHQSTHNTIRSDKNNPTVDNFLQ 975
K DD N S+NSN Q+T + + + ++PT+D +Q
Sbjct: 300 EYQKACDDFENSLHPSENSNSQATIPSKKRNFDDPTIDEMVQ 341
>SPBC6B1.03c |||Pal1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 272
Score = 31.9 bits (69), Expect = 0.18
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Frame = +1
Query: 652 AGSSGDSIIMSRAQTNKGPLYYIVKPNNFNAANNLEQSTILPQTSALNNDASYIIRYTNK 831
A +S + S+++ N P + + PNN E++ + +ND+S + TN+
Sbjct: 174 AATSPIAAFSSQSEANSLPAFLL--PNNSKGVEKSEEN----EDGVTDNDSSNVNSSTNE 227
Query: 832 QPNEFS-NVPKNNDDTSN 882
PN NV N+D T N
Sbjct: 228 SPNPTDINVCSNDDATDN 245
>SPBC30B4.03c |||conserved protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 391
Score = 29.1 bits (62), Expect = 1.3
Identities = 18/60 (30%), Positives = 28/60 (46%)
Frame = +1
Query: 781 TSALNNDASYIIRYTNKQPNEFSNVPKNNDDTSNMNFGSQNSNHQSTHNTIRSDKNNPTV 960
TSAL+ A+ + + Q + SN+P N S N +N + S + R K PT+
Sbjct: 255 TSALHKFATALQQQHQMQKSTSSNIPYANPAPSGFNGSPRNGDVASLASNYRYAKQPPTM 314
Score = 28.7 bits (61), Expect = 1.7
Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 7/74 (9%)
Frame = +1
Query: 763 STILPQTSALNNDASYIIRYTNKQPNEFSNVPKNNDD---TSNMNFGSQ----NSNHQST 921
+T L Q + S I Y N P+ F+ P+N D SN + Q +N S
Sbjct: 262 ATALQQQHQMQKSTSSNIPYANPAPSGFNGSPRNGDVASLASNYRYAKQPPTMPANAISQ 321
Query: 922 HNTIRSDKNNPTVD 963
N + N P +D
Sbjct: 322 ANRLLDQNNIPNMD 335
>SPAC20G8.01 |cdc17||ATP-dependent DNA ligase
Cdc17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 768
Score = 27.9 bits (59), Expect = 3.0
Identities = 14/52 (26%), Positives = 26/52 (50%)
Frame = +1
Query: 442 NSHKSYGYTGIDKDESIVSQDKVAFTNDNGNLYQSKESHSENSGTSTQDTVP 597
N+H G ++++ +IVS+ K T + + S + +SG ST +P
Sbjct: 77 NNHDDTGTQNVERENNIVSEAKKQKTLGSSSSSSDAVSSNNDSGASTPIPLP 128
>SPBC19G7.06 |mbx1||MADS-box transcription factor
Mbx1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 436
Score = 27.1 bits (57), Expect = 5.2
Identities = 24/103 (23%), Positives = 37/103 (35%), Gaps = 3/103 (2%)
Frame = +1
Query: 415 TENLIPNLTNSHKSYGYTGIDKDESIVSQDKVAFTNDNG--NLYQSKESHSENSGTSTQD 588
T+N IP LT ++YG + D S V + + NG + + SH+ G +
Sbjct: 211 TDNFIPFLTPKRQAYGQSSSRADRSSVRRSQSFKNRRNGKPRISRLHTSHASIDGLTDFI 270
Query: 589 TVPKIIYVQTDGLQDNQLYQVAGSSGDSIIMSR-AQTNKGPLY 714
P Y+ L + Q N+G LY
Sbjct: 271 QSPSSGYLDPSSTPITPLDSAINQITPPFLPDNLGQENRGELY 313
>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1471
Score = 27.1 bits (57), Expect = 5.2
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +3
Query: 183 KLSSKTVIWLRNRLXLLXXSFSWWK 257
K +SK V LRN+L +L S S WK
Sbjct: 923 KSNSKKVTVLRNKLNILNNSLSKWK 947
>SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 591
Score = 27.1 bits (57), Expect = 5.2
Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Frame = +1
Query: 748 NNLEQSTILPQTSALNNDASYIIRYTNKQPNEFSNVPKNNDDTSNMNFGSQNSNHQSTHN 927
N+ Q+T +A N + I+Y + E+S ++ + +N S S HQ + +
Sbjct: 514 NSKVQTTSRASENADTNKTQHNIKYIDSYVPEYSIARQSANQKTNEQHPSSTSLHQQSTS 573
Query: 928 TIRSDK--NNPTVDN 966
++S N VD+
Sbjct: 574 DLKSPSFHENSNVDD 588
>SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1010
Score = 27.1 bits (57), Expect = 5.2
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = +2
Query: 359 IATLKXTRLLMNESLRISILKI*YLT*QIVINPMVTLV*I-RTSLLLVKTKWRLQMIMGI 535
++ L + N LR + +I Y Q + L+ + RTS V T+W L +M
Sbjct: 618 VSFLTQANYIKNPYLRAKLAEILYFGVQTHVGRSELLLDVVRTSK--VATRWLLPALMAF 675
Query: 536 YIKVKNLIPKTQ 571
YI++++ TQ
Sbjct: 676 YIEIESTGQSTQ 687
>SPCC4B3.07 |||nuclear pore associated protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 393
Score = 27.1 bits (57), Expect = 5.2
Identities = 13/52 (25%), Positives = 24/52 (46%)
Frame = +1
Query: 472 IDKDESIVSQDKVAFTNDNGNLYQSKESHSENSGTSTQDTVPKIIYVQTDGL 627
+ K + + Q + A +GN SKE+ SEN + ++Y + D +
Sbjct: 15 LKKQQQLEKQKQEASYELSGNSSPSKENGSENVDNGEMEDETMLVYTEEDNI 66
>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 27.1 bits (57), Expect = 5.2
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = +1
Query: 709 LYYIVKPNNFNAANNLEQSTILPQTSALNNDASYIIRYTNKQPNEFS 849
++ I ++ A N + I+P NN A Y+ + NK+P F+
Sbjct: 252 IHNIRATGSYIAGTNGTSNGIVPMIRVYNNTARYVDQGGNKRPGAFA 298
>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1183
Score = 27.1 bits (57), Expect = 5.2
Identities = 28/113 (24%), Positives = 49/113 (43%), Gaps = 4/113 (3%)
Frame = +1
Query: 631 DNQLYQVAGSSGDSIIMSRAQTNKGPLYYIVKPNNFNAANNLEQSTILPQTSAL----NN 798
D++LY+V + S A+TN Y F + +S I P L
Sbjct: 155 DSRLYKVVDVETTTTKSSTAETNAPEKYSTRSGFGFGFSTGTNESEITPNIKVLPPKKKK 214
Query: 799 DASYIIRYTNKQPNEFSNVPKNNDDTSNMNFGSQNSNHQSTHNTIRSDKNNPT 957
+AS+ + N+ P E+ + ++ T + F S++S++ S N D N P+
Sbjct: 215 NASW-GKMLNEDP-EYDSAEEDYLSTDSEEF-SEDSDNSSEEN---KDTNEPS 261
>SPAC8E11.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 338
Score = 26.6 bits (56), Expect = 6.8
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = -1
Query: 262 CSFHQEKLXHNXHSRFRSHITVFEESL 182
CS +++ L H H + HI + E +L
Sbjct: 257 CSINKDALTHRSHESLQQHIELLESTL 283
>SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 681
Score = 26.6 bits (56), Expect = 6.8
Identities = 21/73 (28%), Positives = 33/73 (45%)
Frame = +1
Query: 658 SSGDSIIMSRAQTNKGPLYYIVKPNNFNAANNLEQSTILPQTSALNNDASYIIRYTNKQP 837
SSGDS +S + ++KG L + N + ++N E L ++ L + S N+
Sbjct: 238 SSGDSTPLSGSSSSKGMLMSMSTSENHSLSSNPE----LSNSNLLAKNESPADVSNNESG 293
Query: 838 NEFSNVPKNNDDT 876
NE S P T
Sbjct: 294 NESSKEPDKEHST 306
>SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity factor
complex subunit, Fip1 homolog |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 344
Score = 26.6 bits (56), Expect = 6.8
Identities = 19/81 (23%), Positives = 32/81 (39%)
Frame = +1
Query: 727 PNNFNAANNLEQSTILPQTSALNNDASYIIRYTNKQPNEFSNVPKNNDDTSNMNFGSQNS 906
PN + NN S ++ A + + + T+ QP N ++N N S
Sbjct: 248 PNAY-VNNNPSSSRRESESPANSPNITSSAGMTHAQPTHNPTSSYGNGASTNYNASRPPS 306
Query: 907 NHQSTHNTIRSDKNNPTVDNF 969
NH + N S + P+ D +
Sbjct: 307 NHPHSSNYPSSSRRKPSPDRY 327
>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2344
Score = 26.2 bits (55), Expect = 9.0
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +1
Query: 721 VKPNNFNAANNLEQSTILPQTSALNNDASYIIRYTNKQPNEFSNV 855
+KP +FNA N+ Q+T+ L +SY+ + P NV
Sbjct: 614 LKPLSFNAVNSYVQATLHRTDDGLARFSSYVYHISKGVPLLVRNV 658
>SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 446
Score = 26.2 bits (55), Expect = 9.0
Identities = 19/92 (20%), Positives = 35/92 (38%), Gaps = 2/92 (2%)
Frame = +1
Query: 376 YSALNERKSQDKHTENLIPNLTNSHKSYGYTGIDKDESIVSQDKVAFTNDNGNLYQSKES 555
+ LNE +D + I L + YG + +++ + GN K S
Sbjct: 92 FGKLNENTVKDN--VSFIFELLDEMIDYGIIQTTEPDALARSVSITAVKKKGNALSLKRS 149
Query: 556 HSENSGTSTQDTVPKIIYVQTDGL--QDNQLY 645
HS +T +P + + G+ + N +Y
Sbjct: 150 HSSQLAHTTSSEIPGSVPWRRAGIKYRKNSIY 181
>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1254
Score = 26.2 bits (55), Expect = 9.0
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +1
Query: 844 FSNVPKNNDDTSNMNFGSQNSNHQSTHNTIRSDKNNPTVD 963
FS +P + S+ S +SNH S H+T N+ V+
Sbjct: 29 FSKIPNVKQEKSDSTLSS-SSNHDSNHDTPADVDNSSNVN 67
>SPBC3B8.09 |||U3 snoRNP-associated protein Utp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 597
Score = 26.2 bits (55), Expect = 9.0
Identities = 20/88 (22%), Positives = 38/88 (43%)
Frame = +1
Query: 442 NSHKSYGYTGIDKDESIVSQDKVAFTNDNGNLYQSKESHSENSGTSTQDTVPKIIYVQTD 621
N+ +Y +DE +QDK+ F DNG E S+ + + + + +
Sbjct: 29 NAINTYEDVANSEDEFYNAQDKILFDADNGEQADELEL-SDEELVALESSSDEEDGNAEE 87
Query: 622 GLQDNQLYQVAGSSGDSIIMSRAQTNKG 705
L +N+ +++G D++ NKG
Sbjct: 88 NLSENE--ELSGKKKDAVNEEELYDNKG 113
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,837,607
Number of Sequences: 5004
Number of extensions: 75524
Number of successful extensions: 285
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 280
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 647459150
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -