Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP26_F_D06
(1201 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_02_0006 + 7274148-7274986,7275636-7277586 35 0.11
11_03_0065 - 9522478-9525335,9525513-9526028,9526432-9527247,952... 31 1.4
08_01_1086 - 11150017-11151564 31 2.4
12_01_0171 - 1268803-1269500,1271491-1271567,1271941-1272065,127... 30 3.1
10_08_1006 - 22194013-22196054,22197357-22198337,22198974-22199301 30 3.1
10_05_0012 + 7874326-7874831,7929715-7931393,7931508-7933396 30 3.1
02_02_0537 + 11308195-11309667 30 3.1
01_05_0645 - 23899579-23904483 30 3.1
07_03_1339 + 25879246-25881154,25881502-25881696,25881777-258819... 29 5.5
07_03_0546 - 19325526-19326054,19327109-19327631,19327898-193281... 29 9.6
>11_02_0006 + 7274148-7274986,7275636-7277586
Length = 929
Score = 35.1 bits (77), Expect = 0.11
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Frame = +1
Query: 403 QDKHTENLIPNLTNSHKSYGYTGIDKDESIVSQDKVAFTNDNGNLYQSKE-SHSENSGTS 579
++ H +I T KS G DE V Q K +D+ NL+ + S ENS +
Sbjct: 303 KNNHASRIIT--TTRIKSVGQFCCTSDEGFVYQMKPLTKSDSENLFLKRTFSSEENSPSQ 360
Query: 580 TQDTVPKIIYVQTDGL 627
Q+ + KI+Y + DGL
Sbjct: 361 LQEVINKILY-KCDGL 375
>11_03_0065 - 9522478-9525335,9525513-9526028,9526432-9527247,
9527440-9527767
Length = 1505
Score = 31.5 bits (68), Expect = 1.4
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Frame = +1
Query: 385 LNERKSQDKHTENLIP-NLTNSHKSYGYTGIDKDESIVSQDK----VAFTNDNGNLYQSK 549
L+ R+ + + ++++P + S + T + D+ ++S D VAF + NL QS
Sbjct: 1083 LDYREEKSRDGQDILPMEVEQSMATDKNTKVFSDKILISADPASSMVAFHININNLLQSF 1142
Query: 550 ESHSENSGTSTQDTVPKIIYV 612
+ +S T DT+P+ Y+
Sbjct: 1143 PHNKPSSSTKRHDTIPQTPYI 1163
>08_01_1086 - 11150017-11151564
Length = 515
Score = 30.7 bits (66), Expect = 2.4
Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 5/92 (5%)
Frame = +1
Query: 352 PEHRDPQXYSALNERKSQDKHTENLIP-NLTNSHKSYGYTGIDKDESIVSQDK----VAF 516
P H D L+ R+ + + ++ +P + S + T + D+ ++S D VAF
Sbjct: 86 PHHED----RLLDYREEKSRDGQDKLPMEVEQSMATDKNTKVFSDKILISADPASSMVAF 141
Query: 517 TNDNGNLYQSKESHSENSGTSTQDTVPKIIYV 612
+ NL QS + +S T DT+P+ Y+
Sbjct: 142 HININNLLQSFPHNKPSSSTKRHDTIPQTPYI 173
>12_01_0171 -
1268803-1269500,1271491-1271567,1271941-1272065,
1272146-1272234,1272851-1272936,1273509-1273765
Length = 443
Score = 30.3 bits (65), Expect = 3.1
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = +1
Query: 361 RDPQXYSALNERKSQDKHTENLIPNLTNSHKSYGYTGIDKDESIVSQDKVAFTND 525
++PQ AL+E D +EN + L++S + T D +E + + D N+
Sbjct: 264 QEPQVVPALHEEPQDDDRSENAVQELSSSEAN---TSSDNNEPLAADDSAECMNE 315
>10_08_1006 - 22194013-22196054,22197357-22198337,22198974-22199301
Length = 1116
Score = 30.3 bits (65), Expect = 3.1
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
Frame = +1
Query: 391 ERKSQDKHTENLIPNLTNSHKSYGYTGIDKDESIVSQDK----VAFTNDNGNLYQSKESH 558
E KS+D + L + S + T + D+ ++S D VAF + NL QS +
Sbjct: 698 EEKSRDGQ-DKLPMEVEQSMATDKNTKVFSDKILISADPASSMVAFHININNLLQSFPHN 756
Query: 559 SENSGTSTQDTVPKIIYV 612
+S T DT+P+ Y+
Sbjct: 757 KPSSSTKRHDTIPQTPYI 774
>10_05_0012 + 7874326-7874831,7929715-7931393,7931508-7933396
Length = 1357
Score = 30.3 bits (65), Expect = 3.1
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
Frame = +1
Query: 391 ERKSQDKHTENLIPNLTNSHKSYGYTGIDKDESIVSQDK----VAFTNDNGNLYQSKESH 558
E KS+D + L + S + T + D+ ++S D VAF + NL QS +
Sbjct: 939 EEKSRDGQ-DKLPMEVEQSMATDKNTKVFSDKILISTDPASSMVAFHININNLLQSFPHN 997
Query: 559 SENSGTSTQDTVPKIIYV 612
+S T DT+P+ Y+
Sbjct: 998 KPSSSTKRHDTIPQTPYI 1015
>02_02_0537 + 11308195-11309667
Length = 490
Score = 30.3 bits (65), Expect = 3.1
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
Frame = +1
Query: 391 ERKSQDKHTENLIPNLTNSHKSYGYTGIDKDESIVSQDK----VAFTNDNGNLYQSKESH 558
E KS+D + L + S + T + D+ ++S D VAF + NL QS +
Sbjct: 97 EEKSRDGQ-DKLPMEVEQSMATDKNTKVFSDKILISTDPASSMVAFHININNLLQSFPHN 155
Query: 559 SENSGTSTQDTVPKIIYV 612
+S T DT+P+ Y+
Sbjct: 156 KPSSSTKRHDTIPQTPYI 173
>01_05_0645 - 23899579-23904483
Length = 1634
Score = 30.3 bits (65), Expect = 3.1
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
Frame = +1
Query: 391 ERKSQDKHTENLIPNLTNSHKSYGYTGIDKDESIVSQDK----VAFTNDNGNLYQSKESH 558
E KS+D + L + S + T + D+ ++S D VAF + NL QS +
Sbjct: 1216 EEKSRDGQ-DKLPMEVEQSMATDKNTKVFSDKILISTDPASSMVAFHININNLLQSFPHN 1274
Query: 559 SENSGTSTQDTVPKIIYV 612
+S T DT+P+ Y+
Sbjct: 1275 KPSSSTKRHDTIPQTPYI 1292
>07_03_1339 +
25879246-25881154,25881502-25881696,25881777-25881928,
25882147-25882607,25883723-25883810,25884066-25884135,
25884288-25884361,25884456-25884524,25884647-25884724,
25884946-25885070,25885168-25885240,25885508-25885566,
25885650-25886027,25886134-25886236,25886332-25886544
Length = 1348
Score = 29.5 bits (63), Expect = 5.5
Identities = 18/67 (26%), Positives = 33/67 (49%)
Frame = +1
Query: 757 EQSTILPQTSALNNDASYIIRYTNKQPNEFSNVPKNNDDTSNMNFGSQNSNHQSTHNTIR 936
EQS Q S +N D I+ + P++ V KN++ NMN + + +S + ++
Sbjct: 386 EQSGPKDQVSEVNQDLESQIKCVSISPDDIL-VNKNDNVEGNMNADNFDLGLESKQDIVK 444
Query: 937 SDKNNPT 957
+NP+
Sbjct: 445 PSSSNPS 451
>07_03_0546 - 19325526-19326054,19327109-19327631,19327898-19328152,
19328283-19328472,19328473-19328525,19329295-19329555,
19329670-19329720,19329873-19330121,19330225-19330453,
19332245-19332559
Length = 884
Score = 28.7 bits (61), Expect = 9.6
Identities = 22/92 (23%), Positives = 36/92 (39%)
Frame = +1
Query: 445 SHKSYGYTGIDKDESIVSQDKVAFTNDNGNLYQSKESHSENSGTSTQDTVPKIIYVQTDG 624
S +S Y G D +E + S A NG++ +E +GT+ T+ + DG
Sbjct: 743 SLESDQYDGTDSEEEVASASSRALVGPNGSINSLGVPPAEAAGTTEHPTIGS--SMSFDG 800
Query: 625 LQDNQLYQVAGSSGDSIIMSRAQTNKGPLYYI 720
D + GS D + G +Y +
Sbjct: 801 SLDEAI-DGRGSLDDELSFIHKAKESGVVYLL 831
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,690,683
Number of Sequences: 37544
Number of extensions: 401173
Number of successful extensions: 927
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 887
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 926
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3666490380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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