Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_D06
         (1201 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC112350-1|AAI12351.1|  955|Homo sapiens THRAP3 protein protein.       35   0.67 
BC112330-1|AAI12331.1|  955|Homo sapiens thyroid hormone recepto...    35   0.67 
AL591845-1|CAH71859.1|  955|Homo sapiens thyroid hormone recepto...    35   0.67 
BC065519-1|AAH65519.1|  374|Homo sapiens THRAP3 protein protein.       34   0.89 
BC054046-1|AAH54046.1|  373|Homo sapiens THRAP3 protein protein.       34   0.89 
BC037554-1|AAH37554.1|  672|Homo sapiens THRAP3 protein protein.       34   0.89 
BC019076-1|AAH19076.1|  373|Homo sapiens Unknown (protein for IM...    34   0.89 
BC010997-1|AAH10997.1|  375|Homo sapiens THRAP3 protein protein.       34   0.89 
BC002501-1|AAH02501.1|  375|Homo sapiens THRAP3 protein protein.       34   0.89 
AF117756-1|AAD22034.1|  955|Homo sapiens thyroid hormone recepto...    34   0.89 

>BC112350-1|AAI12351.1|  955|Homo sapiens THRAP3 protein protein.
          Length = 955

 Score = 34.7 bits (76), Expect = 0.67
 Identities = 26/122 (21%), Positives = 54/122 (44%), Gaps = 6/122 (4%)
 Frame = +1

Query: 244 FPGGSYNIPXLGXLIIEXRNHKVPHDLRNVENPSQRPEHRDPQXYSALNERKSQDKHTEN 423
           +P G YN    G      +N++  +  R   + S+ P+ R P   S  + R S DK + +
Sbjct: 94  YPWGQYNRGGYGNYRSNWQNYRQAYSPRRGRSRSRSPKRRSPSPRSRSHSRNS-DKSSSD 152

Query: 424 LIPNLTNSHKSYGYTGIDKDESIVSQDKVAFTNDN------GNLYQSKESHSENSGTSTQ 585
                ++S  S  ++ ++  +   +++K + + D+      G+    +      SG ++Q
Sbjct: 153 RSRRSSSSRSSSNHSRVESSKRKSAKEKKSSSKDSRPSQAAGDNQGDEAKEQTFSGGTSQ 212

Query: 586 DT 591
           DT
Sbjct: 213 DT 214


>BC112330-1|AAI12331.1|  955|Homo sapiens thyroid hormone receptor
           associated protein 3 protein.
          Length = 955

 Score = 34.7 bits (76), Expect = 0.67
 Identities = 26/122 (21%), Positives = 54/122 (44%), Gaps = 6/122 (4%)
 Frame = +1

Query: 244 FPGGSYNIPXLGXLIIEXRNHKVPHDLRNVENPSQRPEHRDPQXYSALNERKSQDKHTEN 423
           +P G YN    G      +N++  +  R   + S+ P+ R P   S  + R S DK + +
Sbjct: 94  YPWGQYNRGGYGNYRSNWQNYRQAYSPRRGRSRSRSPKRRSPSPRSRSHSRNS-DKSSSD 152

Query: 424 LIPNLTNSHKSYGYTGIDKDESIVSQDKVAFTNDN------GNLYQSKESHSENSGTSTQ 585
                ++S  S  ++ ++  +   +++K + + D+      G+    +      SG ++Q
Sbjct: 153 RSRRSSSSRSSSNHSRVESSKRKSAKEKKSSSKDSRPSQAAGDNQGDEAKEQTFSGGTSQ 212

Query: 586 DT 591
           DT
Sbjct: 213 DT 214


>AL591845-1|CAH71859.1|  955|Homo sapiens thyroid hormone receptor
           associated protein 3 protein.
          Length = 955

 Score = 34.7 bits (76), Expect = 0.67
 Identities = 26/122 (21%), Positives = 54/122 (44%), Gaps = 6/122 (4%)
 Frame = +1

Query: 244 FPGGSYNIPXLGXLIIEXRNHKVPHDLRNVENPSQRPEHRDPQXYSALNERKSQDKHTEN 423
           +P G YN    G      +N++  +  R   + S+ P+ R P   S  + R S DK + +
Sbjct: 94  YPWGQYNRGGYGNYRSNWQNYRQAYSPRRGRSRSRSPKRRSPSPRSRSHSRNS-DKSSSD 152

Query: 424 LIPNLTNSHKSYGYTGIDKDESIVSQDKVAFTNDN------GNLYQSKESHSENSGTSTQ 585
                ++S  S  ++ ++  +   +++K + + D+      G+    +      SG ++Q
Sbjct: 153 RSRRSSSSRSSSNHSRVESSKRKSAKEKKSSSKDSRPSQAAGDNQGDEAKEQTFSGGTSQ 212

Query: 586 DT 591
           DT
Sbjct: 213 DT 214


>BC065519-1|AAH65519.1|  374|Homo sapiens THRAP3 protein protein.
          Length = 374

 Score = 34.3 bits (75), Expect = 0.89
 Identities = 26/122 (21%), Positives = 54/122 (44%), Gaps = 6/122 (4%)
 Frame = +1

Query: 244 FPGGSYNIPXLGXLIIEXRNHKVPHDLRNVENPSQRPEHRDPQXYSALNERKSQDKHTEN 423
           +P G YN    G      +N++  +  R   + S+ P+ R P   S  + R S DK + +
Sbjct: 94  YPWGQYNRGGYGNYRSNWQNYRQAYSPRRGRSRSRSPKRRSPSPRSRSHSRNS-DKSSSD 152

Query: 424 LIPNLTNSHKSYGYTGIDKDESIVSQDKVAFTNDN------GNLYQSKESHSENSGTSTQ 585
                ++S  S  ++ ++  +   +++K + + D+      G+    +      SG ++Q
Sbjct: 153 RSRRSSSSRSSSNHSRVESSKRKSAKEKKSSSKDSRPSQAAGDNQGDEVKEQTFSGGTSQ 212

Query: 586 DT 591
           DT
Sbjct: 213 DT 214


>BC054046-1|AAH54046.1|  373|Homo sapiens THRAP3 protein protein.
          Length = 373

 Score = 34.3 bits (75), Expect = 0.89
 Identities = 26/122 (21%), Positives = 54/122 (44%), Gaps = 6/122 (4%)
 Frame = +1

Query: 244 FPGGSYNIPXLGXLIIEXRNHKVPHDLRNVENPSQRPEHRDPQXYSALNERKSQDKHTEN 423
           +P G YN    G      +N++  +  R   + S+ P+ R P   S  + R S DK + +
Sbjct: 94  YPWGQYNRGGYGNYRSNWQNYRQAYSPRRGRSRSRSPKRRSPSPRSRSHSRNS-DKSSSD 152

Query: 424 LIPNLTNSHKSYGYTGIDKDESIVSQDKVAFTNDN------GNLYQSKESHSENSGTSTQ 585
                ++S  S  ++ ++  +   +++K + + D+      G+    +      SG ++Q
Sbjct: 153 RSRRSSSSRSSSNHSRVESSKRKSAKEKKSSSKDSRPSQAAGDNQGDEVKEQTFSGGTSQ 212

Query: 586 DT 591
           DT
Sbjct: 213 DT 214


>BC037554-1|AAH37554.1|  672|Homo sapiens THRAP3 protein protein.
          Length = 672

 Score = 34.3 bits (75), Expect = 0.89
 Identities = 26/122 (21%), Positives = 54/122 (44%), Gaps = 6/122 (4%)
 Frame = +1

Query: 244 FPGGSYNIPXLGXLIIEXRNHKVPHDLRNVENPSQRPEHRDPQXYSALNERKSQDKHTEN 423
           +P G YN    G      +N++  +  R   + S+ P+ R P   S  + R S DK + +
Sbjct: 94  YPWGQYNRGGYGNYRSNWQNYRQAYSPRRGRSRSRSPKRRSPSPRSRSHSRNS-DKSSSD 152

Query: 424 LIPNLTNSHKSYGYTGIDKDESIVSQDKVAFTNDN------GNLYQSKESHSENSGTSTQ 585
                ++S  S  ++ ++  +   +++K + + D+      G+    +      SG ++Q
Sbjct: 153 RSRRSSSSRSSSNHSRVESSKRKSAKEKKSSSKDSRPSQAAGDNQGDEVKEQTFSGGTSQ 212

Query: 586 DT 591
           DT
Sbjct: 213 DT 214


>BC019076-1|AAH19076.1|  373|Homo sapiens Unknown (protein for
           IMAGE:3834482) protein.
          Length = 373

 Score = 34.3 bits (75), Expect = 0.89
 Identities = 26/122 (21%), Positives = 54/122 (44%), Gaps = 6/122 (4%)
 Frame = +1

Query: 244 FPGGSYNIPXLGXLIIEXRNHKVPHDLRNVENPSQRPEHRDPQXYSALNERKSQDKHTEN 423
           +P G YN    G      +N++  +  R   + S+ P+ R P   S  + R S DK + +
Sbjct: 94  YPWGQYNRGGYGNYRSNWQNYRQAYSPRRGRSRSRSPKRRSPSPRSRSHSRNS-DKSSSD 152

Query: 424 LIPNLTNSHKSYGYTGIDKDESIVSQDKVAFTNDN------GNLYQSKESHSENSGTSTQ 585
                ++S  S  ++ ++  +   +++K + + D+      G+    +      SG ++Q
Sbjct: 153 RSRRSSSSRSSSNHSRVESSKRKSAKEKKSSSKDSRPSQAAGDNQGDEVKEQTFSGGTSQ 212

Query: 586 DT 591
           DT
Sbjct: 213 DT 214


>BC010997-1|AAH10997.1|  375|Homo sapiens THRAP3 protein protein.
          Length = 375

 Score = 34.3 bits (75), Expect = 0.89
 Identities = 26/122 (21%), Positives = 54/122 (44%), Gaps = 6/122 (4%)
 Frame = +1

Query: 244 FPGGSYNIPXLGXLIIEXRNHKVPHDLRNVENPSQRPEHRDPQXYSALNERKSQDKHTEN 423
           +P G YN    G      +N++  +  R   + S+ P+ R P   S  + R S DK + +
Sbjct: 94  YPWGQYNRGGYGNYRSNWQNYRQAYSPRRGRSRSRSPKRRSPSPRSRSHSRNS-DKSSSD 152

Query: 424 LIPNLTNSHKSYGYTGIDKDESIVSQDKVAFTNDN------GNLYQSKESHSENSGTSTQ 585
                ++S  S  ++ ++  +   +++K + + D+      G+    +      SG ++Q
Sbjct: 153 RSRRSSSSRSSSNHSRVESSKRKSAKEKKSSSKDSRPSQAAGDNQGDEVKEQTFSGGTSQ 212

Query: 586 DT 591
           DT
Sbjct: 213 DT 214


>BC002501-1|AAH02501.1|  375|Homo sapiens THRAP3 protein protein.
          Length = 375

 Score = 34.3 bits (75), Expect = 0.89
 Identities = 26/122 (21%), Positives = 54/122 (44%), Gaps = 6/122 (4%)
 Frame = +1

Query: 244 FPGGSYNIPXLGXLIIEXRNHKVPHDLRNVENPSQRPEHRDPQXYSALNERKSQDKHTEN 423
           +P G YN    G      +N++  +  R   + S+ P+ R P   S  + R S DK + +
Sbjct: 94  YPWGQYNRGGYGNYRSNWQNYRQAYSPRRGRSRSRSPKRRSPSPRSRSHSRNS-DKSSSD 152

Query: 424 LIPNLTNSHKSYGYTGIDKDESIVSQDKVAFTNDN------GNLYQSKESHSENSGTSTQ 585
                ++S  S  ++ ++  +   +++K + + D+      G+    +      SG ++Q
Sbjct: 153 RSRRSSSSRSSSNHSRVESSKRKSAKEKKSSSKDSRPSQAAGDNQGDEVKEQTFSGGTSQ 212

Query: 586 DT 591
           DT
Sbjct: 213 DT 214


>AF117756-1|AAD22034.1|  955|Homo sapiens thyroid hormone
           receptor-associated protein complex component TRAP150
           protein.
          Length = 955

 Score = 34.3 bits (75), Expect = 0.89
 Identities = 26/122 (21%), Positives = 54/122 (44%), Gaps = 6/122 (4%)
 Frame = +1

Query: 244 FPGGSYNIPXLGXLIIEXRNHKVPHDLRNVENPSQRPEHRDPQXYSALNERKSQDKHTEN 423
           +P G YN    G      +N++  +  R   + S+ P+ R P   S  + R S DK + +
Sbjct: 94  YPWGQYNRGGYGNYRSNWQNYRQAYSPRRGRSRSRSPKRRSPSPRSRSHSRNS-DKSSSD 152

Query: 424 LIPNLTNSHKSYGYTGIDKDESIVSQDKVAFTNDN------GNLYQSKESHSENSGTSTQ 585
                ++S  S  ++ ++  +   +++K + + D+      G+    +      SG ++Q
Sbjct: 153 RSRRSSSSRSSSNHSRVESSKRKSAKEKKSSSKDSRPSQAAGDNQGDEVKEQTFSGGTSQ 212

Query: 586 DT 591
           DT
Sbjct: 213 DT 214


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,865,869
Number of Sequences: 237096
Number of extensions: 2364964
Number of successful extensions: 8504
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 8316
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8503
length of database: 76,859,062
effective HSP length: 92
effective length of database: 55,046,230
effective search space used: 16899192610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)