Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP26_F_D05
(1240 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC096212-1|AAH96212.1| 162|Homo sapiens PRB3 protein protein. 33 2.8
BC096211-1|AAH96211.1| 309|Homo sapiens PRB3 protein protein. 32 3.7
X57010-1|CAA40330.1| 243|Homo sapiens collagen II alpha 1 chain... 32 4.9
X16711-1|CAA34683.1| 1160|Homo sapiens COL2A1 protein. 32 4.9
X16468-1|CAA34488.1| 1418|Homo sapiens protein ( Human mRNA for ... 32 4.9
X07881-1|CAA30728.1| 309|Homo sapiens proline-rich protein G1 p... 32 4.9
M25730-1|AAA58428.2| 167|Homo sapiens alpha-1 type II collagen ... 32 4.9
L10347-1|AAC41772.1| 1487|Homo sapiens alpha-1 type II collagen ... 32 4.9
BC116449-1|AAI16450.1| 1487|Homo sapiens collagen, type II, alph... 32 4.9
BC096210-1|AAH96210.1| 309|Homo sapiens PRB3 protein protein. 32 4.9
BC096209-1|AAH96209.1| 309|Homo sapiens PRB3 protein protein. 32 4.9
BC063833-1|AAH63833.1| 1336|Homo sapiens collagen, type XVIII, a... 31 6.5
BC033715-1|AAH33715.1| 816|Homo sapiens Similar to collagen, ty... 31 6.5
AY484971-3|AAR83297.1| 1516|Homo sapiens type XVIII collagen mid... 31 6.5
AY484971-2|AAR83296.1| 1751|Homo sapiens type XVIII collagen lon... 31 6.5
AY484971-1|AAR83298.1| 1336|Homo sapiens type XVIII collagen sho... 31 6.5
AL163302-2|CAB90482.1| 1519|Homo sapiens human type XVIII collag... 31 6.5
AF018082-1|AAC39659.1| 1336|Homo sapiens type XVIII collagen pro... 31 6.5
AF018081-1|AAC39658.1| 1516|Homo sapiens type XVIII collagen pro... 31 6.5
U04520-2|AAC27816.1| 1685|Homo sapiens type IV collagen alpha 5 ... 31 8.6
U04520-1|AAF66217.2| 1691|Homo sapiens type IV collagen alpha 5 ... 31 8.6
M63473-1|AAA51558.1| 762|Homo sapiens alpha-5 type IV collagen ... 31 8.6
M58526-1|AAA99480.1| 1604|Homo sapiens alpha-5 type IV collagen ... 31 8.6
M31115-1|AAA52045.1| 772|Homo sapiens COL4A5 protein. 31 8.6
AL035425-1|CAB90289.2| 1685|Homo sapiens collagen type IV alpha ... 31 8.6
AL034369-4|CAA22267.2| 1685|Homo sapiens collagen type IV alpha ... 31 8.6
AL031622-1|CAI43038.1| 1685|Homo sapiens collagen type IV alpha ... 31 8.6
>BC096212-1|AAH96212.1| 162|Homo sapiens PRB3 protein protein.
Length = 162
Score = 32.7 bits (71), Expect = 2.8
Identities = 24/79 (30%), Positives = 27/79 (34%), Gaps = 1/79 (1%)
Frame = +3
Query: 996 QRXSXRPGTXK-RPXXXGXPXAPPPGQPXKXDAQXXGGXPXGXLXSXGXPXXPXGPXGXT 1172
QR PG + RP G PP +P K + Q P G G P P P G
Sbjct: 48 QRTPPPPGKPEGRPPQGGNQSQGPPPRPGKPEGQP----PQGGNKPQGPPPHPGKPQGPP 103
Query: 1173 GXXGXXPXXPLGXGAXXXP 1229
G P P G P
Sbjct: 104 PQEGNKPQRPPPPGRPQGP 122
>BC096211-1|AAH96211.1| 309|Homo sapiens PRB3 protein protein.
Length = 309
Score = 32.3 bits (70), Expect = 3.7
Identities = 21/65 (32%), Positives = 25/65 (38%), Gaps = 1/65 (1%)
Frame = +3
Query: 1011 RPGTXK-RPXXXGXPXAPPPGQPXKXDAQXXGGXPXGXLXSXGXPXXPXGPXGXTGXXGX 1187
RPG + +P G PP +P K + G P G S G P P P G G
Sbjct: 179 RPGKPEGQPPQGGNQSQGPPPRPGKPE----GPPPQGGNQSQGPPPRPGKPEGSPSQGGN 234
Query: 1188 XPXXP 1202
P P
Sbjct: 235 KPQGP 239
>X57010-1|CAA40330.1| 243|Homo sapiens collagen II alpha 1 chain
protein.
Length = 243
Score = 31.9 bits (69), Expect = 4.9
Identities = 22/65 (33%), Positives = 23/65 (35%), Gaps = 8/65 (12%)
Frame = +3
Query: 1014 PGTXKRPXXXGXPXAP-PPGQPXKXDAQXXGGXPX-------GXLXSXGXPXXPXGPXGX 1169
PGT P G P P PPG AQ GG G + P P GP G
Sbjct: 57 PGTPGNPGPPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGP 116
Query: 1170 TGXXG 1184
G G
Sbjct: 117 AGAPG 121
>X16711-1|CAA34683.1| 1160|Homo sapiens COL2A1 protein.
Length = 1160
Score = 31.9 bits (69), Expect = 4.9
Identities = 22/65 (33%), Positives = 23/65 (35%), Gaps = 8/65 (12%)
Frame = +3
Query: 1014 PGTXKRPXXXGXPXAP-PPGQPXKXDAQXXGGXPX-------GXLXSXGXPXXPXGPXGX 1169
PGT P G P P PPG AQ GG G + P P GP G
Sbjct: 86 PGTPGNPGPPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGP 145
Query: 1170 TGXXG 1184
G G
Sbjct: 146 AGAPG 150
>X16468-1|CAA34488.1| 1418|Homo sapiens protein ( Human mRNA for
alpha-1 type II collagen. ).
Length = 1418
Score = 31.9 bits (69), Expect = 4.9
Identities = 22/65 (33%), Positives = 23/65 (35%), Gaps = 8/65 (12%)
Frame = +3
Query: 1014 PGTXKRPXXXGXPXAP-PPGQPXKXDAQXXGGXPX-------GXLXSXGXPXXPXGPXGX 1169
PGT P G P P PPG AQ GG G + P P GP G
Sbjct: 86 PGTLGNPGPPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGP 145
Query: 1170 TGXXG 1184
G G
Sbjct: 146 AGAPG 150
>X07881-1|CAA30728.1| 309|Homo sapiens proline-rich protein G1
protein.
Length = 309
Score = 31.9 bits (69), Expect = 4.9
Identities = 21/65 (32%), Positives = 25/65 (38%), Gaps = 1/65 (1%)
Frame = +3
Query: 1011 RPGTXKRPXXXGXPXAP-PPGQPXKXDAQXXGGXPXGXLXSXGXPXXPXGPXGXTGXXGX 1187
RPG + P G + PP +P K + G P G S G P P P G G
Sbjct: 179 RPGKPEGPPPQGGNQSQGPPPRPGKPE----GPPPQGGNQSQGPPPRPGKPEGSPSQGGN 234
Query: 1188 XPXXP 1202
P P
Sbjct: 235 KPRGP 239
>M25730-1|AAA58428.2| 167|Homo sapiens alpha-1 type II collagen
protein.
Length = 167
Score = 31.9 bits (69), Expect = 4.9
Identities = 22/65 (33%), Positives = 23/65 (35%), Gaps = 8/65 (12%)
Frame = +3
Query: 1014 PGTXKRPXXXGXPXAP-PPGQPXKXDAQXXGGXPX-------GXLXSXGXPXXPXGPXGX 1169
PGT P G P P PPG AQ GG G + P P GP G
Sbjct: 86 PGTPGNPGPPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGP 145
Query: 1170 TGXXG 1184
G G
Sbjct: 146 AGAPG 150
>L10347-1|AAC41772.1| 1487|Homo sapiens alpha-1 type II collagen
protein.
Length = 1487
Score = 31.9 bits (69), Expect = 4.9
Identities = 22/65 (33%), Positives = 23/65 (35%), Gaps = 8/65 (12%)
Frame = +3
Query: 1014 PGTXKRPXXXGXPXAP-PPGQPXKXDAQXXGGXPX-------GXLXSXGXPXXPXGPXGX 1169
PGT P G P P PPG AQ GG G + P P GP G
Sbjct: 155 PGTPGNPGPPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGP 214
Query: 1170 TGXXG 1184
G G
Sbjct: 215 AGAPG 219
>BC116449-1|AAI16450.1| 1487|Homo sapiens collagen, type II, alpha 1
(primary osteoarthritis, spondyloepiphyseal dysplasi
protein.
Length = 1487
Score = 31.9 bits (69), Expect = 4.9
Identities = 22/65 (33%), Positives = 23/65 (35%), Gaps = 8/65 (12%)
Frame = +3
Query: 1014 PGTXKRPXXXGXPXAP-PPGQPXKXDAQXXGGXPX-------GXLXSXGXPXXPXGPXGX 1169
PGT P G P P PPG AQ GG G + P P GP G
Sbjct: 155 PGTPGNPGPPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGP 214
Query: 1170 TGXXG 1184
G G
Sbjct: 215 AGAPG 219
>BC096210-1|AAH96210.1| 309|Homo sapiens PRB3 protein protein.
Length = 309
Score = 31.9 bits (69), Expect = 4.9
Identities = 21/65 (32%), Positives = 25/65 (38%), Gaps = 1/65 (1%)
Frame = +3
Query: 1011 RPGTXKRPXXXGXPXAP-PPGQPXKXDAQXXGGXPXGXLXSXGXPXXPXGPXGXTGXXGX 1187
RPG + P G + PP +P K + G P G S G P P P G G
Sbjct: 179 RPGKPEGPPPQGGNQSQGPPPRPGKPE----GPPPQGGNQSQGPPPRPGKPEGSPSQGGN 234
Query: 1188 XPXXP 1202
P P
Sbjct: 235 KPQGP 239
>BC096209-1|AAH96209.1| 309|Homo sapiens PRB3 protein protein.
Length = 309
Score = 31.9 bits (69), Expect = 4.9
Identities = 21/65 (32%), Positives = 25/65 (38%), Gaps = 1/65 (1%)
Frame = +3
Query: 1011 RPGTXKRPXXXGXPXAP-PPGQPXKXDAQXXGGXPXGXLXSXGXPXXPXGPXGXTGXXGX 1187
RPG + P G + PP +P K + G P G S G P P P G G
Sbjct: 179 RPGKPEGPPPQGGNQSQGPPPRPGKPE----GPPPQGGNQSQGPPPRPGKPEGSPSQGGN 234
Query: 1188 XPXXP 1202
P P
Sbjct: 235 KPQGP 239
>BC063833-1|AAH63833.1| 1336|Homo sapiens collagen, type XVIII, alpha
1 protein.
Length = 1336
Score = 31.5 bits (68), Expect = 6.5
Identities = 22/68 (32%), Positives = 22/68 (32%), Gaps = 1/68 (1%)
Frame = +3
Query: 1014 PGTXKRPXXXGXPXAPPPGQPXKXDAQXXGGXP-XGXLXSXGXPXXPXGPXGXTGXXGXX 1190
PG P G P P PG P D G P S P P G G G G
Sbjct: 588 PGPAGPPGPPGPPGPPGPGLPAGFDDMEGSGGPFWSTARSADGPQGPPGLPGLKGDPG-V 646
Query: 1191 PXXPLGXG 1214
P P G
Sbjct: 647 PGLPGAKG 654
>BC033715-1|AAH33715.1| 816|Homo sapiens Similar to collagen, type
XVIII, alpha 1 protein.
Length = 816
Score = 31.5 bits (68), Expect = 6.5
Identities = 22/68 (32%), Positives = 22/68 (32%), Gaps = 1/68 (1%)
Frame = +3
Query: 1014 PGTXKRPXXXGXPXAPPPGQPXKXDAQXXGGXP-XGXLXSXGXPXXPXGPXGXTGXXGXX 1190
PG P G P P PG P D G P S P P G G G G
Sbjct: 68 PGPAGPPGPPGPPGPPGPGLPAGFDDMEGSGGPFWSTARSADGPQGPPGLPGLKGDPG-V 126
Query: 1191 PXXPLGXG 1214
P P G
Sbjct: 127 PGLPGAKG 134
>AY484971-3|AAR83297.1| 1516|Homo sapiens type XVIII collagen middle
variant protein.
Length = 1516
Score = 31.5 bits (68), Expect = 6.5
Identities = 22/68 (32%), Positives = 22/68 (32%), Gaps = 1/68 (1%)
Frame = +3
Query: 1014 PGTXKRPXXXGXPXAPPPGQPXKXDAQXXGGXP-XGXLXSXGXPXXPXGPXGXTGXXGXX 1190
PG P G P P PG P D G P S P P G G G G
Sbjct: 768 PGPAGPPGPPGPPGPPGPGLPAGFDDMEGSGGPFWSTARSADGPQGPPGLPGLKGDPG-V 826
Query: 1191 PXXPLGXG 1214
P P G
Sbjct: 827 PGLPGAKG 834
>AY484971-2|AAR83296.1| 1751|Homo sapiens type XVIII collagen long
variant protein.
Length = 1751
Score = 31.5 bits (68), Expect = 6.5
Identities = 22/68 (32%), Positives = 22/68 (32%), Gaps = 1/68 (1%)
Frame = +3
Query: 1014 PGTXKRPXXXGXPXAPPPGQPXKXDAQXXGGXP-XGXLXSXGXPXXPXGPXGXTGXXGXX 1190
PG P G P P PG P D G P S P P G G G G
Sbjct: 1003 PGPAGPPGPPGPPGPPGPGLPAGFDDMEGSGGPFWSTARSADGPQGPPGLPGLKGDPG-V 1061
Query: 1191 PXXPLGXG 1214
P P G
Sbjct: 1062 PGLPGAKG 1069
>AY484971-1|AAR83298.1| 1336|Homo sapiens type XVIII collagen short
variant protein.
Length = 1336
Score = 31.5 bits (68), Expect = 6.5
Identities = 22/68 (32%), Positives = 22/68 (32%), Gaps = 1/68 (1%)
Frame = +3
Query: 1014 PGTXKRPXXXGXPXAPPPGQPXKXDAQXXGGXP-XGXLXSXGXPXXPXGPXGXTGXXGXX 1190
PG P G P P PG P D G P S P P G G G G
Sbjct: 588 PGPAGPPGPPGPPGPPGPGLPAGFDDMEGSGGPFWSTARSADGPQGPPGLPGLKGDPG-V 646
Query: 1191 PXXPLGXG 1214
P P G
Sbjct: 647 PGLPGAKG 654
>AL163302-2|CAB90482.1| 1519|Homo sapiens human type XVIII collagen
protein.
Length = 1519
Score = 31.5 bits (68), Expect = 6.5
Identities = 22/68 (32%), Positives = 22/68 (32%), Gaps = 1/68 (1%)
Frame = +3
Query: 1014 PGTXKRPXXXGXPXAPPPGQPXKXDAQXXGGXP-XGXLXSXGXPXXPXGPXGXTGXXGXX 1190
PG P G P P PG P D G P S P P G G G G
Sbjct: 768 PGPAGPPGPPGPPGPPGPGLPAGFDDMEGSGGPFWSTARSADGPQGPPGLPGLKGDPG-V 826
Query: 1191 PXXPLGXG 1214
P P G
Sbjct: 827 PGLPGAKG 834
>AF018082-1|AAC39659.1| 1336|Homo sapiens type XVIII collagen protein.
Length = 1336
Score = 31.5 bits (68), Expect = 6.5
Identities = 22/68 (32%), Positives = 22/68 (32%), Gaps = 1/68 (1%)
Frame = +3
Query: 1014 PGTXKRPXXXGXPXAPPPGQPXKXDAQXXGGXP-XGXLXSXGXPXXPXGPXGXTGXXGXX 1190
PG P G P P PG P D G P S P P G G G G
Sbjct: 588 PGPAGPPGPPGPPGPPGPGLPAGFDDMEGSGGPFWSTARSADGPQGPPGLPGLKGDPG-V 646
Query: 1191 PXXPLGXG 1214
P P G
Sbjct: 647 PGLPGAKG 654
>AF018081-1|AAC39658.1| 1516|Homo sapiens type XVIII collagen protein.
Length = 1516
Score = 31.5 bits (68), Expect = 6.5
Identities = 22/68 (32%), Positives = 22/68 (32%), Gaps = 1/68 (1%)
Frame = +3
Query: 1014 PGTXKRPXXXGXPXAPPPGQPXKXDAQXXGGXP-XGXLXSXGXPXXPXGPXGXTGXXGXX 1190
PG P G P P PG P D G P S P P G G G G
Sbjct: 768 PGPAGPPGPPGPPGPPGPGLPAGFDDMEGSGGPFWSTARSADGPQGPPGLPGLKGDPG-V 826
Query: 1191 PXXPLGXG 1214
P P G
Sbjct: 827 PGLPGAKG 834
>U04520-2|AAC27816.1| 1685|Homo sapiens type IV collagen alpha 5 chain
protein.
Length = 1685
Score = 31.1 bits (67), Expect = 8.6
Identities = 28/84 (33%), Positives = 30/84 (35%), Gaps = 6/84 (7%)
Frame = +3
Query: 951 GYPQNXGIXXEXTCDQRXSXRPGTXK---RPXXXGXPXAP-PPGQPXKXDAQXXGGXP-- 1112
GYP N GI D PGT +P G P P PPG G P
Sbjct: 1089 GYPGNPGIKGSVG-DPGLPGLPGTPGAKGQPGLPGFPGTPGPPGPKGISGPPGNPGLPGE 1147
Query: 1113 XGXLXSXGXPXXPXGPXGXTGXXG 1184
G + G P P GP G G G
Sbjct: 1148 PGPVGGGGHPGQP-GPPGEKGKPG 1170
>U04520-1|AAF66217.2| 1691|Homo sapiens type IV collagen alpha 5 chain
protein.
Length = 1691
Score = 31.1 bits (67), Expect = 8.6
Identities = 28/84 (33%), Positives = 30/84 (35%), Gaps = 6/84 (7%)
Frame = +3
Query: 951 GYPQNXGIXXEXTCDQRXSXRPGTXK---RPXXXGXPXAP-PPGQPXKXDAQXXGGXP-- 1112
GYP N GI D PGT +P G P P PPG G P
Sbjct: 1089 GYPGNPGIKGSVG-DPGLPGLPGTPGAKGQPGLPGFPGTPGPPGPKGISGPPGNPGLPGE 1147
Query: 1113 XGXLXSXGXPXXPXGPXGXTGXXG 1184
G + G P P GP G G G
Sbjct: 1148 PGPVGGGGHPGQP-GPPGEKGKPG 1170
>M63473-1|AAA51558.1| 762|Homo sapiens alpha-5 type IV collagen
protein.
Length = 762
Score = 31.1 bits (67), Expect = 8.6
Identities = 28/84 (33%), Positives = 30/84 (35%), Gaps = 6/84 (7%)
Frame = +3
Query: 951 GYPQNXGIXXEXTCDQRXSXRPGTXK---RPXXXGXPXAP-PPGQPXKXDAQXXGGXP-- 1112
GYP N GI D PGT +P G P P PPG G P
Sbjct: 166 GYPGNPGIKGSVG-DPGLPGLPGTPGAKGQPGLPGFPGTPGPPGPKGISGPPGNPGLPGE 224
Query: 1113 XGXLXSXGXPXXPXGPXGXTGXXG 1184
G + G P P GP G G G
Sbjct: 225 PGPVGGGGHPGQP-GPPGEKGKPG 247
>M58526-1|AAA99480.1| 1604|Homo sapiens alpha-5 type IV collagen
protein.
Length = 1604
Score = 31.1 bits (67), Expect = 8.6
Identities = 28/84 (33%), Positives = 30/84 (35%), Gaps = 6/84 (7%)
Frame = +3
Query: 951 GYPQNXGIXXEXTCDQRXSXRPGTXK---RPXXXGXPXAP-PPGQPXKXDAQXXGGXP-- 1112
GYP N GI D PGT +P G P P PPG G P
Sbjct: 1008 GYPGNPGIKGSVG-DPGLPGLPGTPGAKGQPGLPGFPGTPGPPGPKGISGPPGNPGLPGE 1066
Query: 1113 XGXLXSXGXPXXPXGPXGXTGXXG 1184
G + G P P GP G G G
Sbjct: 1067 PGPVGGGGHPGQP-GPPGEKGKPG 1089
>M31115-1|AAA52045.1| 772|Homo sapiens COL4A5 protein.
Length = 772
Score = 31.1 bits (67), Expect = 8.6
Identities = 28/84 (33%), Positives = 30/84 (35%), Gaps = 6/84 (7%)
Frame = +3
Query: 951 GYPQNXGIXXEXTCDQRXSXRPGTXK---RPXXXGXPXAP-PPGQPXKXDAQXXGGXP-- 1112
GYP N GI D PGT +P G P P PPG G P
Sbjct: 176 GYPGNPGIKGSVG-DPGLPGLPGTPGAKGQPGLPGFPGTPGPPGPKGISGPPGNPGLPGE 234
Query: 1113 XGXLXSXGXPXXPXGPXGXTGXXG 1184
G + G P P GP G G G
Sbjct: 235 PGPVGGGGHPGQP-GPPGEKGKPG 257
>AL035425-1|CAB90289.2| 1685|Homo sapiens collagen type IV alpha 5
protein.
Length = 1685
Score = 31.1 bits (67), Expect = 8.6
Identities = 28/84 (33%), Positives = 30/84 (35%), Gaps = 6/84 (7%)
Frame = +3
Query: 951 GYPQNXGIXXEXTCDQRXSXRPGTXK---RPXXXGXPXAP-PPGQPXKXDAQXXGGXP-- 1112
GYP N GI D PGT +P G P P PPG G P
Sbjct: 1089 GYPGNPGIKGSVG-DPGLPGLPGTPGAKGQPGLPGFPGTPGPPGPKGISGPPGNPGLPGE 1147
Query: 1113 XGXLXSXGXPXXPXGPXGXTGXXG 1184
G + G P P GP G G G
Sbjct: 1148 PGPVGGGGHPGQP-GPPGEKGKPG 1170
>AL034369-4|CAA22267.2| 1685|Homo sapiens collagen type IV alpha 5
protein.
Length = 1685
Score = 31.1 bits (67), Expect = 8.6
Identities = 28/84 (33%), Positives = 30/84 (35%), Gaps = 6/84 (7%)
Frame = +3
Query: 951 GYPQNXGIXXEXTCDQRXSXRPGTXK---RPXXXGXPXAP-PPGQPXKXDAQXXGGXP-- 1112
GYP N GI D PGT +P G P P PPG G P
Sbjct: 1089 GYPGNPGIKGSVG-DPGLPGLPGTPGAKGQPGLPGFPGTPGPPGPKGISGPPGNPGLPGE 1147
Query: 1113 XGXLXSXGXPXXPXGPXGXTGXXG 1184
G + G P P GP G G G
Sbjct: 1148 PGPVGGGGHPGQP-GPPGEKGKPG 1170
>AL031622-1|CAI43038.1| 1685|Homo sapiens collagen type IV alpha 5
protein.
Length = 1685
Score = 31.1 bits (67), Expect = 8.6
Identities = 28/84 (33%), Positives = 30/84 (35%), Gaps = 6/84 (7%)
Frame = +3
Query: 951 GYPQNXGIXXEXTCDQRXSXRPGTXK---RPXXXGXPXAP-PPGQPXKXDAQXXGGXP-- 1112
GYP N GI D PGT +P G P P PPG G P
Sbjct: 1089 GYPGNPGIKGSVG-DPGLPGLPGTPGAKGQPGLPGFPGTPGPPGPKGISGPPGNPGLPGE 1147
Query: 1113 XGXLXSXGXPXXPXGPXGXTGXXG 1184
G + G P P GP G G G
Sbjct: 1148 PGPVGGGGHPGQP-GPPGEKGKPG 1170
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,081,765
Number of Sequences: 237096
Number of extensions: 2444067
Number of successful extensions: 5422
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 3995
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5245
length of database: 76,859,062
effective HSP length: 92
effective length of database: 55,046,230
effective search space used: 17614793600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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