Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP26_F_D05
(1240 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024811-5|AAF60775.1| 285|Caenorhabditis elegans Collagen prot... 36 0.059
Z46791-4|CAA86758.1| 317|Caenorhabditis elegans Hypothetical pr... 33 0.55
U39745-4|AAA80446.1| 325|Caenorhabditis elegans Collagen protei... 32 0.73
U58736-1|AAB00598.1| 302|Caenorhabditis elegans Dumpy : shorter... 32 0.96
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 32 0.96
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 32 0.96
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 32 0.96
Z81503-1|CAB04111.1| 305|Caenorhabditis elegans Hypothetical pr... 31 1.7
Z68219-2|CAA92476.1| 300|Caenorhabditis elegans Hypothetical pr... 31 1.7
Z79694-1|CAB01959.1| 303|Caenorhabditis elegans Hypothetical pr... 31 2.2
Z49938-2|CAA90187.1| 306|Caenorhabditis elegans Hypothetical pr... 31 2.2
U52002-6|AAB37732.1| 142|Caenorhabditis elegans Hypothetical pr... 30 2.9
AF045646-2|AAK29827.1| 371|Caenorhabditis elegans Collagen prot... 30 2.9
Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical pr... 30 3.9
Z67990-1|CAA91932.1| 316|Caenorhabditis elegans Hypothetical pr... 30 3.9
V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein ( Caeno... 30 3.9
V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein ( Caeno... 30 3.9
U40187-2|AAA81159.1| 282|Caenorhabditis elegans Collagen protei... 30 3.9
U39646-2|AAA80368.2| 223|Caenorhabditis elegans Hypothetical pr... 30 3.9
M25479-1|AAA27993.1| 282|Caenorhabditis elegans collagen protein. 30 3.9
L15419-1|AAA17726.1| 308|Caenorhabditis elegans col-40 collagen... 30 3.9
J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.ele... 30 3.9
J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein ( C.ele... 30 3.9
AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen stru... 30 3.9
U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protei... 29 5.1
U42437-5|AAA83499.1| 302|Caenorhabditis elegans Dumpy : shorter... 29 5.1
M80650-1|AAA27985.1| 298|Caenorhabditis elegans alpha-collagen ... 29 5.1
M23559-1|AAA27994.1| 302|Caenorhabditis elegans protein ( C.ele... 29 5.1
AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular col... 29 5.1
Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical pr... 29 6.8
Z70208-2|CAA94136.1| 304|Caenorhabditis elegans Hypothetical pr... 29 6.8
Z68320-1|CAB63328.2| 278|Caenorhabditis elegans Hypothetical pr... 29 6.8
Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical pr... 29 9.0
Z68215-7|CAA92453.1| 289|Caenorhabditis elegans Hypothetical pr... 29 9.0
U50312-8|AAA92324.1| 294|Caenorhabditis elegans Collagen protei... 29 9.0
>AC024811-5|AAF60775.1| 285|Caenorhabditis elegans Collagen protein
48 protein.
Length = 285
Score = 35.9 bits (79), Expect = 0.059
Identities = 20/59 (33%), Positives = 22/59 (37%), Gaps = 1/59 (1%)
Frame = +3
Query: 1011 RPGTXKRPXXXGXPXAP-PPGQPXKXDAQXXGGXPXGXLXSXGXPXXPXGPXGXTGXXG 1184
R G P G P PPGQP + + G P L P P GP G G G
Sbjct: 165 RNGEDGAPGPQGPSGPPGPPGQPGQPGQRGPPGEPGALLPGGDAPPGPSGPPGRPGAPG 223
>Z46791-4|CAA86758.1| 317|Caenorhabditis elegans Hypothetical protein
C09G5.5 protein.
Length = 317
Score = 32.7 bits (71), Expect = 0.55
Identities = 27/78 (34%), Positives = 28/78 (35%)
Frame = +3
Query: 951 GYPQNXGIXXEXTCDQRXSXRPGTXKRPXXXGXPXAPPPGQPXKXDAQXXGGXPXGXLXS 1130
G P N G + QR PG RP G P A PGQP G P G
Sbjct: 185 GAPGNPGRPGQS--GQRSRGLPGPSGRPGPQGPPGA--PGQPGSGSTPGPAG-PPGPPGP 239
Query: 1131 XGXPXXPXGPXGXTGXXG 1184
G P P G G G G
Sbjct: 240 NGQPGHP-GQDGQPGAPG 256
>U39745-4|AAA80446.1| 325|Caenorhabditis elegans Collagen protein 173
protein.
Length = 325
Score = 32.3 bits (70), Expect = 0.73
Identities = 23/72 (31%), Positives = 25/72 (34%)
Frame = +3
Query: 1014 PGTXKRPXXXGXPXAPPPGQPXKXDAQXXGGXPXGXLXSXGXPXXPXGPXGXTGXXGXXP 1193
PG P G P P G P + + GG P G P P GP G G G P
Sbjct: 210 PGRQGMPGPTGPPG--PRGPPGETGDEGEGG-PDGIPMEKKSPPGPRGPPGPAGPDG--P 264
Query: 1194 XXPLGXGAXXXP 1229
P G P
Sbjct: 265 QGPEGRSGKQGP 276
>U58736-1|AAB00598.1| 302|Caenorhabditis elegans Dumpy : shorter than
wild-typeprotein 3 protein.
Length = 302
Score = 31.9 bits (69), Expect = 0.96
Identities = 22/61 (36%), Positives = 22/61 (36%), Gaps = 3/61 (4%)
Frame = +3
Query: 1011 RPGTXKRPXXXGXPX---APPPGQPXKXDAQXXGGXPXGXLXSXGXPXXPXGPXGXTGXX 1181
RPG RP G P A PG P K Q P G G P GP G G
Sbjct: 124 RPGAPGRPGNPGPPGRDGALLPGPPPKPPCQKCPPGPPGPAGPPGPKGLP-GPQGDAGTS 182
Query: 1182 G 1184
G
Sbjct: 183 G 183
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 31.9 bits (69), Expect = 0.96
Identities = 21/71 (29%), Positives = 22/71 (30%)
Frame = +3
Query: 1017 GTXKRPXXXGXPXAPPPGQPXKXDAQXXGGXPXGXLXSXGXPXXPXGPXGXTGXXGXXPX 1196
G+ P G P PPPG P P G G P P P G G P
Sbjct: 702 GSSALPPITGGPP-PPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPP 760
Query: 1197 XPLGXGAXXXP 1229
P G P
Sbjct: 761 PPPPPGGCPPP 771
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 31.9 bits (69), Expect = 0.96
Identities = 21/71 (29%), Positives = 22/71 (30%)
Frame = +3
Query: 1017 GTXKRPXXXGXPXAPPPGQPXKXDAQXXGGXPXGXLXSXGXPXXPXGPXGXTGXXGXXPX 1196
G+ P G P PPPG P P G G P P P G G P
Sbjct: 702 GSSALPPITGGPP-PPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPP 760
Query: 1197 XPLGXGAXXXP 1229
P G P
Sbjct: 761 PPPPPGGCPPP 771
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 31.9 bits (69), Expect = 0.96
Identities = 21/71 (29%), Positives = 22/71 (30%)
Frame = +3
Query: 1017 GTXKRPXXXGXPXAPPPGQPXKXDAQXXGGXPXGXLXSXGXPXXPXGPXGXTGXXGXXPX 1196
G+ P G P PPPG P P G G P P P G G P
Sbjct: 285 GSSALPPITGGPP-PPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPP 343
Query: 1197 XPLGXGAXXXP 1229
P G P
Sbjct: 344 PPPPPGGCPPP 354
>Z81503-1|CAB04111.1| 305|Caenorhabditis elegans Hypothetical protein
F14F7.1 protein.
Length = 305
Score = 31.1 bits (67), Expect = 1.7
Identities = 24/80 (30%), Positives = 27/80 (33%), Gaps = 1/80 (1%)
Frame = +3
Query: 948 YGYPQNXGIXXEXTCDQRXSXRPGTXKRPXXXGXPXAP-PPGQPXKXDAQXXGGXPXGXL 1124
+G P N G C T +P G P P PPG+P D Q G
Sbjct: 127 WGMPGNPGKGGSGPCHPVVP----TPCKPCPGGRPGPPGPPGRPGS-DGQPGRPATGGGA 181
Query: 1125 XSXGXPXXPXGPXGXTGXXG 1184
P P GP G G G
Sbjct: 182 APRPGPPGPKGPRGAPGNSG 201
Score = 29.5 bits (63), Expect = 5.1
Identities = 28/100 (28%), Positives = 29/100 (29%), Gaps = 6/100 (6%)
Frame = +3
Query: 948 YGYPQNXGIXXEXTCDQRXSXRP-GTXKRPXXXGXPXAPP----PGQPXKXDAQXXGGX- 1109
Y PQ G C P G P G P AP PG P K +
Sbjct: 86 YAQPQGGGGGGGGQCSTCCRPGPPGAGGTPGKPGRPGAPGAWGMPGNPGKGGSGPCHPVV 145
Query: 1110 PXGXLXSXGXPXXPXGPXGXTGXXGXXPXXPLGXGAXXXP 1229
P G P GP G G G G GA P
Sbjct: 146 PTPCKPCPGGRPGPPGPPGRPGSDGQPGRPATGGGAAPRP 185
>Z68219-2|CAA92476.1| 300|Caenorhabditis elegans Hypothetical protein
T05A1.2 protein.
Length = 300
Score = 31.1 bits (67), Expect = 1.7
Identities = 22/63 (34%), Positives = 24/63 (38%), Gaps = 5/63 (7%)
Frame = +3
Query: 1011 RPGTXKRPXXXGXPXAP--PPGQPXK-XDAQXXGGXPXGXLXSXGXPXXP--XGPXGXTG 1175
RPGT RP G P P PP P + P G + G P P GP G G
Sbjct: 114 RPGTPGRPGAPGAPGHPGKPPQSPCEPLTPPPCPACPPGPPGAPGAPGKPGSEGPPGPPG 173
Query: 1176 XXG 1184
G
Sbjct: 174 HDG 176
Score = 30.7 bits (66), Expect = 2.2
Identities = 23/73 (31%), Positives = 26/73 (35%)
Frame = +3
Query: 1011 RPGTXKRPXXXGXPXAPPPGQPXKXDAQXXGGXPXGXLXSXGXPXXPXGPXGXTGXXGXX 1190
+PG+ P G P PGQP + G P G G P P G G G
Sbjct: 198 KPGSQGPPGPPGHSDEPKPGQPGQPGRAGPRG-PRGVAGIKGKDGAPGSP-GQPGPRG-G 254
Query: 1191 PXXPLGXGAXXXP 1229
P P GA P
Sbjct: 255 PGEPGQDGAPGQP 267
>Z79694-1|CAB01959.1| 303|Caenorhabditis elegans Hypothetical protein
C15A11.1 protein.
Length = 303
Score = 30.7 bits (66), Expect = 2.2
Identities = 20/74 (27%), Positives = 22/74 (29%), Gaps = 2/74 (2%)
Frame = +3
Query: 1014 PGTXKRPXXXGXPXAPPPGQPXKXDAQXXGGXPXGXLXSXGXPXXPXGPXGXTGXXG--X 1187
PG +P G PG P G + P P GP G G G
Sbjct: 165 PGPNGQPGAAGTTSTNEPGSPGPAGPPGPAGPAGEDAAAPESPPGPPGPPGPPGKDGEAG 224
Query: 1188 XPXXPLGXGAXXXP 1229
P P G G P
Sbjct: 225 APGAPGGPGTDGAP 238
>Z49938-2|CAA90187.1| 306|Caenorhabditis elegans Hypothetical protein
F38A3.1 protein.
Length = 306
Score = 30.7 bits (66), Expect = 2.2
Identities = 22/79 (27%), Positives = 30/79 (37%), Gaps = 1/79 (1%)
Frame = +3
Query: 951 GYPQNXGIXXEXTCDQRXSXRPGTXKRPXXXGXPX-APPPGQPXKXDAQXXGGXPXGXLX 1127
G+P G + + PG +P G P + P G+P + G P G
Sbjct: 210 GHPGQDGQPGQPGESREVPGAPGPAGQPGSQGEPGPSGPDGRPGQPGQAGQPGGP-GDAG 268
Query: 1128 SXGXPXXPXGPXGXTGXXG 1184
+ G P P GP G G G
Sbjct: 269 NDGQPGQPGGP-GEDGEDG 286
>U52002-6|AAB37732.1| 142|Caenorhabditis elegans Hypothetical protein
F08B4.7 protein.
Length = 142
Score = 30.3 bits (65), Expect = 2.9
Identities = 16/47 (34%), Positives = 18/47 (38%)
Frame = +3
Query: 1062 PPGQPXKXDAQXXGGXPXGXLXSXGXPXXPXGPXGXTGXXGXXPXXP 1202
PPG P + G G + G P P GP G G G P P
Sbjct: 88 PPGMPMMAP-RPFPGPGVGFPGAPGMPPFPGGPMGMAGPPGMPPMMP 133
>AF045646-2|AAK29827.1| 371|Caenorhabditis elegans Collagen protein
103 protein.
Length = 371
Score = 30.3 bits (65), Expect = 2.9
Identities = 24/78 (30%), Positives = 25/78 (32%), Gaps = 6/78 (7%)
Frame = +3
Query: 1014 PGTXKRPXXXGXPXAP-PPGQPXKXDAQXXGG----XPXGXLXSXGXPXXPXGPXGXTGX 1178
PG G P P PGQP + GG P G G P P G G
Sbjct: 220 PGAPGPAGDAGSPGQPGAPGQPGRPGKNAQGGSSRPGPPGPAGPPGPPGNNGAPGGGYGV 279
Query: 1179 XGXXPXXPLG-XGAXXXP 1229
P P G GA P
Sbjct: 280 GPPGPPGPSGRPGAPGQP 297
>Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical protein
W01B6.7 protein.
Length = 301
Score = 29.9 bits (64), Expect = 3.9
Identities = 23/73 (31%), Positives = 24/73 (32%), Gaps = 1/73 (1%)
Frame = +3
Query: 1014 PGTXKRPXXXGXPXAPPPGQPXKXDAQXXGGXPXGXLXSXGXPXXPXGPXGXTGXXGXXP 1193
PG G P AP G P + A GG P P G G G G P
Sbjct: 188 PGPAGPAGNDGAPGAP--GGPGEPGASEQGGPGEPGPAGPPGPAGPAGNDGAPGTGGPGP 245
Query: 1194 XXPLG-XGAXXXP 1229
P G GA P
Sbjct: 246 AGPKGPPGAAGAP 258
Score = 29.1 bits (62), Expect = 6.8
Identities = 21/73 (28%), Positives = 24/73 (32%)
Frame = +3
Query: 1011 RPGTXKRPXXXGXPXAPPPGQPXKXDAQXXGGXPXGXLXSXGXPXXPXGPXGXTGXXGXX 1190
+PG P G + P + Q G P G P P GP G G G
Sbjct: 121 KPGAPGAPGNPGKGASAPCEPVTQPPCQPCPGGPPG----PAGPAGPPGPPGPDGNPG-S 175
Query: 1191 PXXPLGXGAXXXP 1229
P P G G P
Sbjct: 176 PAGPSGPGPAGPP 188
Score = 29.1 bits (62), Expect = 6.8
Identities = 15/38 (39%), Positives = 15/38 (39%)
Frame = -1
Query: 1213 PXPRGXXGXXPXXPVXPXGPXGFXGXPXDXKXPXGXPP 1100
P P G G P P P GP G G P P G P
Sbjct: 149 PCPGGPPG--PAGPAGPPGPPGPDGNPGSPAGPSGPGP 184
>Z67990-1|CAA91932.1| 316|Caenorhabditis elegans Hypothetical protein
F02D10.1 protein.
Length = 316
Score = 29.9 bits (64), Expect = 3.9
Identities = 17/53 (32%), Positives = 18/53 (33%)
Frame = +3
Query: 1050 PXAPPPGQPXKXDAQXXGGXPXGXLXSXGXPXXPXGPXGXTGXXGXXPXXPLG 1208
P PPP QP G P G G P P G +G P P G
Sbjct: 156 PSTPPPCQPCPAGPPGPPG-PDGTPGEPGGPGPAGSPAGPSGPGPAGPPGPAG 207
Score = 29.1 bits (62), Expect = 6.8
Identities = 19/65 (29%), Positives = 21/65 (32%)
Frame = +3
Query: 1014 PGTXKRPXXXGXPXAPPPGQPXKXDAQXXGGXPXGXLXSXGXPXXPXGPXGXTGXXGXXP 1193
PG P G P P G P + A GG P P GP G +G
Sbjct: 203 PGPAGPPGNDGQPGQP--GGPGQDGASSAGGEAGPGPAGPPGPAGPAGPDGQSGSGSAGG 260
Query: 1194 XXPLG 1208
P G
Sbjct: 261 PGPKG 265
Score = 28.7 bits (61), Expect = 9.0
Identities = 14/38 (36%), Positives = 14/38 (36%)
Frame = -1
Query: 1228 GXXXAPXPRGXXGXXPXXPVXPXGPXGFXGXPXDXKXP 1115
G A P G G P P P GP G G P P
Sbjct: 184 GPGPAGSPAGPSGPGPAGPPGPAGPPGNDGQPGQPGGP 221
>V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-2 coding for a collagen.
).
Length = 301
Score = 29.9 bits (64), Expect = 3.9
Identities = 23/73 (31%), Positives = 24/73 (32%), Gaps = 1/73 (1%)
Frame = +3
Query: 1014 PGTXKRPXXXGXPXAPPPGQPXKXDAQXXGGXPXGXLXSXGXPXXPXGPXGXTGXXGXXP 1193
PG G P AP G P + A GG P P G G G G P
Sbjct: 188 PGPAGPAGNDGAPGAP--GGPGEPGASEQGGPGEPGPAGPPGPAGPAGNDGAPGTGGPGP 245
Query: 1194 XXPLG-XGAXXXP 1229
P G GA P
Sbjct: 246 AGPKGPPGAAGAP 258
Score = 29.1 bits (62), Expect = 6.8
Identities = 21/73 (28%), Positives = 24/73 (32%)
Frame = +3
Query: 1011 RPGTXKRPXXXGXPXAPPPGQPXKXDAQXXGGXPXGXLXSXGXPXXPXGPXGXTGXXGXX 1190
+PG P G + P + Q G P G P P GP G G G
Sbjct: 121 KPGAPGAPGNPGKGASAPCEPVTQPPCQPCPGGPPG----PAGPAGPPGPPGPDGNPG-S 175
Query: 1191 PXXPLGXGAXXXP 1229
P P G G P
Sbjct: 176 PAGPSGPGPAGPP 188
Score = 29.1 bits (62), Expect = 6.8
Identities = 15/38 (39%), Positives = 15/38 (39%)
Frame = -1
Query: 1213 PXPRGXXGXXPXXPVXPXGPXGFXGXPXDXKXPXGXPP 1100
P P G G P P P GP G G P P G P
Sbjct: 149 PCPGGPPG--PAGPAGPPGPPGPDGNPGSPAGPSGPGP 184
>V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-1 coding for a collagen.
).
Length = 296
Score = 29.9 bits (64), Expect = 3.9
Identities = 22/68 (32%), Positives = 23/68 (33%), Gaps = 8/68 (11%)
Frame = +3
Query: 1014 PGTXKRPXXXGXPXAP-PPGQPXKXDAQXXGG-----XPXGXLXSXG--XPXXPXGPXGX 1169
PG P G P P PPG P G P G + G P P GP G
Sbjct: 212 PGAPGEPGDSGPPGPPGPPGAPGNDGPPGPPGPKGAPGPDGPPGADGQSGPPGPPGPAGT 271
Query: 1170 TGXXGXXP 1193
G G P
Sbjct: 272 PGEKGICP 279
>U40187-2|AAA81159.1| 282|Caenorhabditis elegans Collagen protein 8
protein.
Length = 282
Score = 29.9 bits (64), Expect = 3.9
Identities = 18/57 (31%), Positives = 19/57 (33%)
Frame = +3
Query: 1014 PGTXKRPXXXGXPXAPPPGQPXKXDAQXXGGXPXGXLXSXGXPXXPXGPXGXTGXXG 1184
PGT RP G P P P + G G G P P P G G G
Sbjct: 200 PGTEYRPGQAGRAGPPGPRGPPGPEGNPGGAGEDGNQGPVGHPGVPGRP-GIPGKSG 255
>U39646-2|AAA80368.2| 223|Caenorhabditis elegans Hypothetical
protein F47B7.4 protein.
Length = 223
Score = 29.9 bits (64), Expect = 3.9
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -2
Query: 144 DISDVSLCLFMVIEFDNCQIFSCQLFVVP 58
D+S ++L MV E D C +FSC ++P
Sbjct: 109 DLSTIALAPMMVQEVDGCAVFSCPPGLLP 137
>M25479-1|AAA27993.1| 282|Caenorhabditis elegans collagen protein.
Length = 282
Score = 29.9 bits (64), Expect = 3.9
Identities = 18/57 (31%), Positives = 19/57 (33%)
Frame = +3
Query: 1014 PGTXKRPXXXGXPXAPPPGQPXKXDAQXXGGXPXGXLXSXGXPXXPXGPXGXTGXXG 1184
PGT RP G P P P + G G G P P P G G G
Sbjct: 200 PGTEYRPGQAGRAGPPGPRGPPGPEGNPGGAGEDGNQGPVGHPGVPGRP-GIPGKSG 255
>L15419-1|AAA17726.1| 308|Caenorhabditis elegans col-40 collagen
protein.
Length = 308
Score = 29.9 bits (64), Expect = 3.9
Identities = 24/73 (32%), Positives = 26/73 (35%), Gaps = 1/73 (1%)
Frame = +3
Query: 1014 PGTXKRPXXXGXPXAP-PPGQPXKXDAQXXGGXPXGXLXSXGXPXXPXGPXGXTGXXGXX 1190
PGT P G P P PGQ + G P G + G P P GP G G G
Sbjct: 206 PGTSGNPGTDGAPGNPGAPGQVTETP-----GTP-GPAGAAGPPGPP-GPAGNPGSAGAS 258
Query: 1191 PXXPLGXGAXXXP 1229
P G P
Sbjct: 259 EPGPAGPAGDAGP 271
>J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.elegans
(nematode)collagen 2 (col-2) gene, complete cds. ).
Length = 301
Score = 29.9 bits (64), Expect = 3.9
Identities = 23/73 (31%), Positives = 24/73 (32%), Gaps = 1/73 (1%)
Frame = +3
Query: 1014 PGTXKRPXXXGXPXAPPPGQPXKXDAQXXGGXPXGXLXSXGXPXXPXGPXGXTGXXGXXP 1193
PG G P AP G P + A GG P P G G G G P
Sbjct: 188 PGPAGPAGNDGAPGAP--GGPGEPGASEQGGPGEPGPAGPPGPAGPAGNDGAPGTGGPGP 245
Query: 1194 XXPLG-XGAXXXP 1229
P G GA P
Sbjct: 246 AGPKGPPGAAGAP 258
Score = 29.1 bits (62), Expect = 6.8
Identities = 21/73 (28%), Positives = 24/73 (32%)
Frame = +3
Query: 1011 RPGTXKRPXXXGXPXAPPPGQPXKXDAQXXGGXPXGXLXSXGXPXXPXGPXGXTGXXGXX 1190
+PG P G + P + Q G P G P P GP G G G
Sbjct: 121 KPGAPGAPGNPGKGASAPCEPVTQPPCQPCPGGPPG----PAGPAGPPGPPGPDGNPG-S 175
Query: 1191 PXXPLGXGAXXXP 1229
P P G G P
Sbjct: 176 PAGPSGPGPAGPP 188
Score = 29.1 bits (62), Expect = 6.8
Identities = 15/38 (39%), Positives = 15/38 (39%)
Frame = -1
Query: 1213 PXPRGXXGXXPXXPVXPXGPXGFXGXPXDXKXPXGXPP 1100
P P G G P P P GP G G P P G P
Sbjct: 149 PCPGGPPG--PAGPAGPPGPPGPDGNPGSPAGPSGPGP 184
>J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein ( C.elegans
(nematode)collagen 1 (col-1) gene, complete cds. ).
Length = 296
Score = 29.9 bits (64), Expect = 3.9
Identities = 22/68 (32%), Positives = 23/68 (33%), Gaps = 8/68 (11%)
Frame = +3
Query: 1014 PGTXKRPXXXGXPXAP-PPGQPXKXDAQXXGG-----XPXGXLXSXG--XPXXPXGPXGX 1169
PG P G P P PPG P G P G + G P P GP G
Sbjct: 212 PGAPGEPGDSGPPGPPGPPGAPGNDGPPGPPGPKGAPGPDGPPGADGQSGPPGPPGPAGT 271
Query: 1170 TGXXGXXP 1193
G G P
Sbjct: 272 PGEKGICP 279
>AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen
structural gene, probabledorsal and ventral cuticle
component, from embryo to adult,but maximal in dauer
(28.0 kD) (col-2) protein.
Length = 301
Score = 29.9 bits (64), Expect = 3.9
Identities = 23/73 (31%), Positives = 24/73 (32%), Gaps = 1/73 (1%)
Frame = +3
Query: 1014 PGTXKRPXXXGXPXAPPPGQPXKXDAQXXGGXPXGXLXSXGXPXXPXGPXGXTGXXGXXP 1193
PG G P AP G P + A GG P P G G G G P
Sbjct: 188 PGPAGPAGNDGAPGAP--GGPGEPGASEQGGPGEPGPAGPPGPAGPAGNDGAPGTGGPGP 245
Query: 1194 XXPLG-XGAXXXP 1229
P G GA P
Sbjct: 246 AGPKGPPGAAGAP 258
Score = 29.1 bits (62), Expect = 6.8
Identities = 21/73 (28%), Positives = 24/73 (32%)
Frame = +3
Query: 1011 RPGTXKRPXXXGXPXAPPPGQPXKXDAQXXGGXPXGXLXSXGXPXXPXGPXGXTGXXGXX 1190
+PG P G + P + Q G P G P P GP G G G
Sbjct: 121 KPGAPGAPGNPGKGASAPCEPVTQPPCQPCPGGPPG----PAGPAGPPGPPGPDGNPG-S 175
Query: 1191 PXXPLGXGAXXXP 1229
P P G G P
Sbjct: 176 PAGPSGPGPAGPP 188
Score = 29.1 bits (62), Expect = 6.8
Identities = 15/38 (39%), Positives = 15/38 (39%)
Frame = -1
Query: 1213 PXPRGXXGXXPXXPVXPXGPXGFXGXPXDXKXPXGXPP 1100
P P G G P P P GP G G P P G P
Sbjct: 149 PCPGGPPG--PAGPAGPPGPPGPDGNPGSPAGPSGPGP 184
>U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protein 34
protein.
Length = 299
Score = 29.5 bits (63), Expect = 5.1
Identities = 24/79 (30%), Positives = 25/79 (31%), Gaps = 4/79 (5%)
Frame = +3
Query: 1005 SXRPGTXKRPXXXGXPXAP----PPGQPXKXDAQXXGGXPXGXLXSXGXPXXPXGPXGXT 1172
S PG+ P P P PPG P A G P S GP G
Sbjct: 165 SGEPGSPGLPGQDAAPGEPGPKGPPGPPGAPGAPGTPGEPGVPAQSEPLIPGEPGPPGEA 224
Query: 1173 GXXGXXPXXPLGXGAXXXP 1229
G G P P GA P
Sbjct: 225 GPQG-PPGSPGQPGADGSP 242
Score = 29.5 bits (63), Expect = 5.1
Identities = 20/60 (33%), Positives = 23/60 (38%)
Frame = +3
Query: 1014 PGTXKRPXXXGXPXAPPPGQPXKXDAQXXGGXPXGXLXSXGXPXXPXGPXGXTGXXGXXP 1193
PG+ +P G P P P P D Q G + G P P GP G G G P
Sbjct: 230 PGSPGQPGADGSPGQPGPKGPNGPDGQ------PGADGNPGAP-GPAGPPGSPGERGICP 282
>U42437-5|AAA83499.1| 302|Caenorhabditis elegans Dumpy : shorter than
wild-typeprotein 13 protein.
Length = 302
Score = 29.5 bits (63), Expect = 5.1
Identities = 22/79 (27%), Positives = 25/79 (31%), Gaps = 1/79 (1%)
Frame = +3
Query: 951 GYPQNXGIXXEXTCDQRXSXRPGTXKRPXXXGXPXAPP-PGQPXKXDAQXXGGXPXGXLX 1127
G N E C PG +P G P AP PG P K + P +
Sbjct: 90 GNGPNFDSGCEGCCQPGPQGAPGAPGKPGRPGKPGAPGFPGNPGKAPQK-----PCEEIT 144
Query: 1128 SXGXPXXPXGPXGXTGXXG 1184
P GP G G G
Sbjct: 145 PPPCKPCPQGPPGAPGLPG 163
>M80650-1|AAA27985.1| 298|Caenorhabditis elegans alpha-collagen
protein.
Length = 298
Score = 29.5 bits (63), Expect = 5.1
Identities = 24/74 (32%), Positives = 26/74 (35%), Gaps = 2/74 (2%)
Frame = +3
Query: 1014 PGTXKRPXXXGXPXAP--PPGQPXKXDAQXXGGXPXGXLXSXGXPXXPXGPXGXTGXXGX 1187
PG P G P P PPG P + Q P G G P P G G G G
Sbjct: 174 PGQDAAPGEPG-PKGPKGPPGAPGAPEHQESQECPRGEPLIPGEP-GPPGEAGPQGPPG- 230
Query: 1188 XPXXPLGXGAXXXP 1229
P P G+ P
Sbjct: 231 SPGQPGADGSPGQP 244
Score = 29.5 bits (63), Expect = 5.1
Identities = 20/60 (33%), Positives = 23/60 (38%)
Frame = +3
Query: 1014 PGTXKRPXXXGXPXAPPPGQPXKXDAQXXGGXPXGXLXSXGXPXXPXGPXGXTGXXGXXP 1193
PG+ +P G P P P P D Q G + G P P GP G G G P
Sbjct: 229 PGSPGQPGADGSPGQPGPKGPNGPDGQ------PGADGNPGAP-GPAGPPGSPGERGICP 281
>M23559-1|AAA27994.1| 302|Caenorhabditis elegans protein ( C.elegans
collagen (dpy-13) gene, complete cds. ).
Length = 302
Score = 29.5 bits (63), Expect = 5.1
Identities = 22/79 (27%), Positives = 25/79 (31%), Gaps = 1/79 (1%)
Frame = +3
Query: 951 GYPQNXGIXXEXTCDQRXSXRPGTXKRPXXXGXPXAPP-PGQPXKXDAQXXGGXPXGXLX 1127
G N E C PG +P G P AP PG P K + P +
Sbjct: 90 GNGPNFDSGCEGCCQPGPQGAPGAPGKPGRPGKPGAPGFPGNPGKAPQK-----PCEEIT 144
Query: 1128 SXGXPXXPXGPXGXTGXXG 1184
P GP G G G
Sbjct: 145 PPPCKPCPQGPPGAPGLPG 163
>AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular collagen
RAM-4 protein.
Length = 299
Score = 29.5 bits (63), Expect = 5.1
Identities = 24/79 (30%), Positives = 25/79 (31%), Gaps = 4/79 (5%)
Frame = +3
Query: 1005 SXRPGTXKRPXXXGXPXAP----PPGQPXKXDAQXXGGXPXGXLXSXGXPXXPXGPXGXT 1172
S PG+ P P P PPG P A G P S GP G
Sbjct: 165 SGEPGSPGLPGQDAAPGEPGPKGPPGPPGAPGAPGTPGEPGVPAQSEPLIPGEPGPPGEA 224
Query: 1173 GXXGXXPXXPLGXGAXXXP 1229
G G P P GA P
Sbjct: 225 GPQG-PPGSPGQPGADGSP 242
Score = 29.5 bits (63), Expect = 5.1
Identities = 20/60 (33%), Positives = 23/60 (38%)
Frame = +3
Query: 1014 PGTXKRPXXXGXPXAPPPGQPXKXDAQXXGGXPXGXLXSXGXPXXPXGPXGXTGXXGXXP 1193
PG+ +P G P P P P D Q G + G P P GP G G G P
Sbjct: 230 PGSPGQPGADGSPGQPGPKGPNGPDGQ------PGADGNPGAP-GPAGPPGSPGERGICP 282
>Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical protein
F23H12.4 protein.
Length = 301
Score = 29.1 bits (62), Expect = 6.8
Identities = 21/70 (30%), Positives = 22/70 (31%), Gaps = 10/70 (14%)
Frame = +3
Query: 1014 PGTXKRPXXXGXPXAP----------PPGQPXKXDAQXXGGXPXGXLXSXGXPXXPXGPX 1163
PG P G P P PPG P A G P + P P GP
Sbjct: 217 PGAPGEPGDSGPPGPPGPPGAPGNDGPPGPPGPKGAPGPDGPP--GVDGQSGPPGPPGPA 274
Query: 1164 GXTGXXGXXP 1193
G G G P
Sbjct: 275 GTPGEKGICP 284
>Z70208-2|CAA94136.1| 304|Caenorhabditis elegans Hypothetical protein
F54B11.2 protein.
Length = 304
Score = 29.1 bits (62), Expect = 6.8
Identities = 21/73 (28%), Positives = 25/73 (34%)
Frame = +3
Query: 1011 RPGTXKRPXXXGXPXAPPPGQPXKXDAQXXGGXPXGXLXSXGXPXXPXGPXGXTGXXGXX 1190
+PG +P G P AP G +A+ P P P GP G G G
Sbjct: 119 KPGKPGKPGAPGNPGAPGKGAAVPCEAK----TPPPCKPCPAGPPGPPGPDGPAGPAG-- 172
Query: 1191 PXXPLGXGAXXXP 1229
P G A P
Sbjct: 173 PDGEAGSPAAPSP 185
>Z68320-1|CAB63328.2| 278|Caenorhabditis elegans Hypothetical protein
W07A12.5 protein.
Length = 278
Score = 29.1 bits (62), Expect = 6.8
Identities = 22/61 (36%), Positives = 22/61 (36%), Gaps = 4/61 (6%)
Frame = +3
Query: 1014 PGTXKRPXXXGXPXAP----PPGQPXKXDAQXXGGXPXGXLXSXGXPXXPXGPXGXTGXX 1181
PG P G P P P G K A GG P G G P P GP G G
Sbjct: 203 PGLPGVPGSVGLPGIPGKPGPSGPDGKIGATGPGGDP-GKPGGNGIPGEP-GPIGNQGPR 260
Query: 1182 G 1184
G
Sbjct: 261 G 261
>Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical protein
F12F6.6 protein.
Length = 1126
Score = 28.7 bits (61), Expect = 9.0
Identities = 16/53 (30%), Positives = 17/53 (32%)
Frame = +3
Query: 1044 GXPXAPPPGQPXKXDAQXXGGXPXGXLXSXGXPXXPXGPXGXTGXXGXXPXXP 1202
G P + PPG P G G G P G G G G P P
Sbjct: 293 GMPGSFPPGAPGPGGPGMPGSFAPGAPGPGGPGGYPSGGPGMPGMQGGYPGGP 345
>Z68215-7|CAA92453.1| 289|Caenorhabditis elegans Hypothetical protein
C53B4.5 protein.
Length = 289
Score = 28.7 bits (61), Expect = 9.0
Identities = 26/86 (30%), Positives = 28/86 (32%), Gaps = 13/86 (15%)
Frame = +3
Query: 1011 RPGTXKRPXXXGX----------PXAPPPGQPXKXDAQXXGGXPXGXLXSXG--XPXXPX 1154
RPG P G P PPP +P G P G + G P P
Sbjct: 106 RPGKPGAPGLNGNPGRPPKEPCEPITPPPCKPCPEGPPGPAG-PPGPQGNKGPLGPPGPP 164
Query: 1155 GPXGXTGXXG-XXPXXPLGXGAXXXP 1229
GP G G G P P G G P
Sbjct: 165 GPEGPNGTAGNKGPAGPPGPGGKPGP 190
Score = 28.7 bits (61), Expect = 9.0
Identities = 22/59 (37%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Frame = +3
Query: 1011 RPGTXKRPXXXGXPXA-PPPGQPXKXDAQXXGGXPXGXLXSXGXPXXPXGPXGXTGXXG 1184
+PG+ P G P + P GQP K AQ G P G + G P P G G G G
Sbjct: 204 QPGSPGEPGRPGQPGSRGPAGQPGKDGAQ---GGP-GEKGANGEPGQP-GRDGQPGRPG 257
>U50312-8|AAA92324.1| 294|Caenorhabditis elegans Collagen protein 145
protein.
Length = 294
Score = 28.7 bits (61), Expect = 9.0
Identities = 23/71 (32%), Positives = 23/71 (32%), Gaps = 6/71 (8%)
Frame = +3
Query: 1014 PGTXKRPXXXGXPXAPP----PGQPXKXDAQXXGGXPXG-XLXSXGXPXXPXGPXGXTGX 1178
PG P G P P PGQP D Q G P P P G G G
Sbjct: 182 PGAPGAPGDNGQPGTPGQDGFPGQPGA-DGQRGSGAPGAPGAPGNAGPAGPAGQDGFPGQ 240
Query: 1179 XG-XXPXXPLG 1208
G P P G
Sbjct: 241 DGAPGPAGPAG 251
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,906,119
Number of Sequences: 27780
Number of extensions: 396248
Number of successful extensions: 1378
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1300
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3432936682
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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