Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_D02
         (1172 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr...   242   8e-65
SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|...   242   8e-65
SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces pomb...   242   8e-65
SPBC1105.17 |cnp1|sim2|CENP-A|Schizosaccharomyces pombe|chr 2|||...   129   6e-31
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    29   0.94 
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi...    27   5.0  
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    26   8.8  
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    26   8.8  

>SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 136

 Score =  242 bits (592), Expect = 8e-65
 Identities = 118/127 (92%), Positives = 122/127 (96%)
 Frame = +2

Query: 80  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 259
           MARTKQTARKSTGGKAPRKQLA+KAARK+APATGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLASKAARKAAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 260 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 439
           LLIRKLPFQRLVREIAQDFKTDLRFQSSA+ ALQEA EAYLV LFEDTNLCAIH KRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVSLFEDTNLCAIHGKRVTI 120

Query: 440 MPKDIQL 460
            PKD+QL
Sbjct: 121 QPKDMQL 127


>SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 136

 Score =  242 bits (592), Expect = 8e-65
 Identities = 118/127 (92%), Positives = 122/127 (96%)
 Frame = +2

Query: 80  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 259
           MARTKQTARKSTGGKAPRKQLA+KAARK+APATGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLASKAARKAAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 260 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 439
           LLIRKLPFQRLVREIAQDFKTDLRFQSSA+ ALQEA EAYLV LFEDTNLCAIH KRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVSLFEDTNLCAIHGKRVTI 120

Query: 440 MPKDIQL 460
            PKD+QL
Sbjct: 121 QPKDMQL 127


>SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 136

 Score =  242 bits (592), Expect = 8e-65
 Identities = 118/127 (92%), Positives = 122/127 (96%)
 Frame = +2

Query: 80  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 259
           MARTKQTARKSTGGKAPRKQLA+KAARK+APATGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLASKAARKAAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 260 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 439
           LLIRKLPFQRLVREIAQDFKTDLRFQSSA+ ALQEA EAYLV LFEDTNLCAIH KRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVSLFEDTNLCAIHGKRVTI 120

Query: 440 MPKDIQL 460
            PKD+QL
Sbjct: 121 QPKDMQL 127


>SPBC1105.17 |cnp1|sim2|CENP-A|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 120

 Score =  129 bits (312), Expect = 6e-31
 Identities = 70/112 (62%), Positives = 88/112 (78%), Gaps = 10/112 (8%)
 Frame = +2

Query: 155 ARKSAPATGG--VKKPH--RYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDF-- 316
           A+KS  A  G  + +P   RYRPGT ALREIR+YQ+ST+LLI++LPF R+VREI+ +F  
Sbjct: 2   AKKSLMAEPGDPIPRPRKKRYRPGTTALREIRKYQRSTDLLIQRLPFSRIVREISSEFVA 61

Query: 317 --KTD--LRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQL 460
              TD  LR+QS+A+  LQEA+EA+LV LFEDTNLCAIHAKRVTIM +D+QL
Sbjct: 62  NFSTDVGLRWQSTALQCLQEAAEAFLVHLFEDTNLCAIHAKRVTIMQRDMQL 113


>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
           Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1388

 Score = 29.5 bits (63), Expect = 0.94
 Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 6/77 (7%)
 Frame = +2

Query: 185 VKKPHRYRPGTVALRE-IRRYQKSTELLIRKLPFQRLVREIAQ--DFKTDLRFQSSAVMA 355
           + + HR +    +L E + +++ S  LLI   P Q  +RE+A   DF    +F+    + 
Sbjct: 507 IDEAHRLKNSESSLYEALSQFKNSNRLLITGTPLQNNIRELAALVDFLMPGKFEIREEIN 566

Query: 356 LQ---EASEAYLVGLFE 397
           L+   E  EAY+  L E
Sbjct: 567 LEAPDEEQEAYIRSLQE 583


>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 451

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 16/74 (21%), Positives = 31/74 (41%)
 Frame = +1

Query: 79  NGSNEADRPKVDRGESSAQTTRDESCPKKRTGDRRREEAPQISTRHRSPQRDKAIPEKHR 258
           +  +++     D   ++  TT  E   +  T     EE+  +     S   DK++  KH 
Sbjct: 305 SSDSDSSSSSEDGNSNTDTTTSGEVSAQSSTNSTSSEESTSVKDEDSSKIHDKSLKRKHE 364

Query: 259 AFDPQAAVSKISAR 300
             D +++ S  S+R
Sbjct: 365 --DDESSTSTKSSR 376


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 16/73 (21%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
 Frame = +1

Query: 100  RPKVDRGESSAQTTRDESCPKKRTGDRRREEAPQISTRHRSPQRDKAIPEKHRAFD--PQ 273
            R  +D    S  T RDE  P KR  ++   +      +   P+ D++   K    +   +
Sbjct: 1832 RHNIDSANLSRGTERDEDIPNKRAKNKVSTDQTAADNKVTKPRLDESSSSKQDVLNKIDE 1891

Query: 274  AAVSKISARNRPG 312
            + + + S++ +PG
Sbjct: 1892 SEIEQASSK-KPG 1903


>SPAC26A3.09c |rga2||GTPase activating protein
           Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = -1

Query: 191 SSRRRSPVRFFGQLSSRVVCAELSPLSTFGRSASFEPFPS 72
           +S ++SP    G+LSS+ +    SP+S F +S S    PS
Sbjct: 515 NSSQKSP----GKLSSKGLLNSFSPISPFSKSKSHNHHPS 550


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,651,505
Number of Sequences: 5004
Number of extensions: 66308
Number of successful extensions: 174
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 629529512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)