Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_C24
         (1169 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom...    97   5e-21
SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces po...    29   1.2  
SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|...    28   2.2  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   3.8  
SPBC2A9.11c ||SPBC2D10.01c|nuclear export factor|Schizosaccharom...    27   5.0  
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    26   8.8  
SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr 2...    26   8.8  

>SPAC926.04c |hsp90|swo1|heat shock protein
           Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 704

 Score = 96.7 bits (230), Expect = 5e-21
 Identities = 52/105 (49%), Positives = 72/105 (68%), Gaps = 1/105 (0%)
 Frame = +3

Query: 48  MAAKKHLEXNPDHSIVETLRQKAEAD-KNDKAVKDLVILLYETALLSSGFTLDEPQVHAS 224
           M+++K  E NP   I+  L++K E +   D++VKDL  +LYETALLSSGFTLD+P  +A 
Sbjct: 603 MSSRKTFEINPKSPIIAELKKKVEENGAEDRSVKDLATILYETALLSSGFTLDDPSAYAQ 662

Query: 225 RIYRMIKLGLGIDEDEPIQVEEPASGDVPPLEGDADDASRMEEVD 359
           RI R+I LGL IDE+E   +EE ++  V   E +A+  S+MEEVD
Sbjct: 663 RINRLISLGLSIDEEEEAPIEEISTESV-AAENNAE--SKMEEVD 704


>SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 262

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +3

Query: 276 IQVEEPASGDVPPLEGDADDASRMEEVD 359
           IQ + P   D PP++ DAD+    EE D
Sbjct: 157 IQWDNPDFDDAPPVQPDADEEEEEEEAD 184


>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 699

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = -3

Query: 612 LIMCNTALRTFSKVAYITNSNKTKIQYCKYSGTIMTLL*KKSTENHFDYL 463
           L+  N   + FSK++ I+ S    I+YCK  G +        T +H D+L
Sbjct: 6   LVAINFEQQIFSKISEISESVGRAIRYCKEDGKVEGC----ETASHVDFL 51


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +1

Query: 934 GGGVXGFSAXXIGXPPGKGG 993
           GGG  GF     G PPG GG
Sbjct: 187 GGGFGGFGGGSGGPPPGPGG 206


>SPBC2A9.11c ||SPBC2D10.01c|nuclear export
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 20/101 (19%), Positives = 45/101 (44%), Gaps = 2/101 (1%)
 Frame = +3

Query: 57  KKHLEXNPDH--SIVETLRQKAEADKNDKAVKDLVILLYETALLSSGFTLDEPQVHASRI 230
           K+H    PD     +    Q AE +   +   ++ +L+     + + + +D   ++   +
Sbjct: 3   KEHHSPWPDSLKEFIGRCIQDAEENSQPELEDEVKLLISRQYEMGNIWNVDWSSMNLESL 62

Query: 231 YRMIKLGLGIDEDEPIQVEEPASGDVPPLEGDADDASRMEE 353
            ++      I ED+  +VE+P SG+   L  + D+  + E+
Sbjct: 63  RKLTNAQNTIIEDKKRKVEKPVSGNQFSLLSEEDEVDKKEK 103


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1639

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 17/57 (29%), Positives = 29/57 (50%)
 Frame = +3

Query: 96   ETLRQKAEADKNDKAVKDLVILLYETALLSSGFTLDEPQVHASRIYRMIKLGLGIDE 266
            E+ R+K E+DKN ++ K +     E+     G + D   V   R+YR    G+ +D+
Sbjct: 1281 ESNRRKLESDKNVQSNKYVNPFASESEFCRCGASADPYTVLFWRLYRNKPSGIKLDK 1337


>SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 411

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -1

Query: 320 LQWRHVSRSRLFNLNRLIFINTKTQFDHSIDTGSMDL 210
           L+W  + RS   N+N    ++   Q  HS+DT S+D+
Sbjct: 272 LEWS-IQRSNDSNINCSTCLDVDCQHLHSLDTHSLDI 307


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,561,071
Number of Sequences: 5004
Number of extensions: 63236
Number of successful extensions: 138
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 627537330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)