Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP26_F_C22
(1210 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1206 + 34941293-34941562,34942052-34942153,34942249-349425... 31 2.4
02_01_0782 + 5827364-5827441,5827733-5827787,5828761-5828849,582... 31 2.4
05_01_0358 + 2808627-2809847 30 3.2
07_03_1554 + 27659995-27660093,27661084-27661120,27661204-276612... 30 4.2
07_03_1389 + 26212117-26212119,26212721-26212875,26213402-262134... 29 5.5
06_03_0097 - 16607936-16608712,16610114-16610320,16611220-166113... 29 5.5
04_04_1371 + 32995337-32995358,32995745-32995822,32995876-329960... 29 5.5
11_01_0482 - 3714442-3715593 29 7.3
06_03_0137 + 17066914-17067505,17067588-17067904 29 7.3
09_04_0320 - 16656620-16657243,16658198-16659106 29 9.7
07_01_1119 + 10331275-10331330,10331343-10331462,10332023-10332164 29 9.7
03_06_0268 + 32758087-32758448,32758539-32759652 29 9.7
>02_05_1206 +
34941293-34941562,34942052-34942153,34942249-34942521,
34942863-34942913
Length = 231
Score = 30.7 bits (66), Expect = 2.4
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +3
Query: 594 LLVRASGGGEYWGEYHGVKAKVYFRGAPYERD 689
+L +SGGGE E G+ K+YF PY D
Sbjct: 41 VLEGSSGGGEAEAEAAGITTKLYFGNLPYNCD 72
>02_01_0782 +
5827364-5827441,5827733-5827787,5828761-5828849,
5829167-5829191,5829645-5829683,5830316-5830433,
5830857-5831023,5831155-5831518,5831589-5831701,
5832185-5832310,5832436-5833339,5833694-5834036
Length = 806
Score = 30.7 bits (66), Expect = 2.4
Identities = 26/102 (25%), Positives = 43/102 (42%)
Frame = +2
Query: 422 RSWSRRLQSNLQRHPCVRSIEHDHH*RQVGSRDPSVPADAVRTSHQRPRSVPLLRSSAAG 601
RS SR +LQR RS+E + V P++ D R+ + +PL RS +
Sbjct: 523 RSISRSSARSLQRRSRSRSLERSPVRKSVSRSPPTM--DKGRSISRTSGRLPLRRSISRS 580
Query: 602 PSFRRRRVLGRIPWRQGQGVLPGRSVRTRRTNLPETATAEAR 727
P RR+ R P + + + VR + ++ +R
Sbjct: 581 PDRPYRRIPSRSPRKNTRRSISRSPVRLSKRSISPVRGGRSR 622
>05_01_0358 + 2808627-2809847
Length = 406
Score = 30.3 bits (65), Expect = 3.2
Identities = 17/40 (42%), Positives = 21/40 (52%)
Frame = +1
Query: 562 PALGTAPQEFCCWSELQAAASTGANTMASRPRCTSGALRT 681
P G APQ F L AAAS G +AS+P +G +T
Sbjct: 138 PRAGFAPQIFLSGDPLAAAASPGWMAIASQPFSVAGKWQT 177
>07_03_1554 +
27659995-27660093,27661084-27661120,27661204-27661280,
27662272-27662342,27662512-27662590,27662726-27662828,
27662963-27663082,27663180-27663257,27663416-27663471,
27663588-27663657,27664179-27664266,27664503-27664800,
27664943-27665158,27665521-27665841,27666054-27666103,
27666493-27666553,27666633-27666716,27666926-27667039,
27667134-27667300,27667559-27667628,27668328-27668507,
27668619-27668807
Length = 875
Score = 29.9 bits (64), Expect = 4.2
Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Frame = +3
Query: 546 GPHISA-RARYRSSGVLLLVRASGGGEYWGEYHGVKAKVYFRGAPYERDGRTYLKLQQLK 722
GP S R +S+G + V+ S +WG +G K++ + + G L +Q+L+
Sbjct: 542 GPEYSVDRQSIKSNGTQMHVKRSN---FWGRNNGRKSQ---QSELADSSGEEELAIQRLE 595
Query: 723 LDFSVKDIKMGVENLDNSNAVLQAAL 800
+ + D+++ + NA+LQA+L
Sbjct: 596 I--TKNDLQIRIAKEARGNAILQASL 619
>07_03_1389 +
26212117-26212119,26212721-26212875,26213402-26213479,
26214211-26214375,26214453-26214554,26214661-26214786,
26215454-26215490
Length = 221
Score = 29.5 bits (63), Expect = 5.5
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 6/38 (15%)
Frame = -1
Query: 634 SPQYSPPPEARTS------SRTPEERYRARALM*GPYS 539
SP+YSPPP R+ SR+P RY R + YS
Sbjct: 148 SPRYSPPPRGRSPYRSPSYSRSPSPRYARRRMRERSYS 185
>06_03_0097 -
16607936-16608712,16610114-16610320,16611220-16611336,
16611409-16611690,16611811-16612294,16612791-16612929,
16613138-16613243,16613396-16613562,16613632-16613707,
16614173-16614321,16614813-16614874,16615232-16615335,
16616856-16616950,16617046-16617136,16617785-16617922
Length = 997
Score = 29.5 bits (63), Expect = 5.5
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = +3
Query: 435 DGYRATFKDIHASGASNMTITNVRSDLETHQFQLTLYGPHISARARYRSS 584
DG +F+++HASG + + + + + DL F + P R R + S
Sbjct: 197 DGATESFEELHASGNTPVYVLHPKQDLHGLGFDPFKHAPEFKDRKRLQKS 246
>04_04_1371 +
32995337-32995358,32995745-32995822,32995876-32996019,
32997595-32997930,32998014-32998166,32998286-32998501,
32998600-33000695
Length = 1014
Score = 29.5 bits (63), Expect = 5.5
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +1
Query: 547 DLTSAPALGTAPQEFCCWSELQAAASTGANTMASRPRCTSGAL 675
DL+ G+ PQ+ C + ++ + N S PRC S +L
Sbjct: 649 DLSGNHITGSIPQKICSLASIEILDLSNNNLSGSIPRCASASL 691
>11_01_0482 - 3714442-3715593
Length = 383
Score = 29.1 bits (62), Expect = 7.3
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +3
Query: 525 QFQLTLYGPHISARA-RYRSSGVLLLVRASGGGE 623
+ + T Y PH SA+A + R LLVR GGG+
Sbjct: 154 EVEKTAYRPHQSAKAHQLREGSTGLLVRRGGGGD 187
>06_03_0137 + 17066914-17067505,17067588-17067904
Length = 302
Score = 29.1 bits (62), Expect = 7.3
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +3
Query: 546 GPHISARARYRSSGVLLLVRASGGGEYWGEYHGVKAKVYFRGAPYER-DGRTYLKLQ 713
G H +A AR R++ + +L RA GG G A+V G + R GR +L LQ
Sbjct: 97 GDHQAALARLRAAVLSVLARARRGGRRAGGGSSASARV-LTGTVFGRLRGRVHLALQ 152
>09_04_0320 - 16656620-16657243,16658198-16659106
Length = 510
Score = 28.7 bits (61), Expect = 9.7
Identities = 18/50 (36%), Positives = 23/50 (46%)
Frame = +2
Query: 551 SHQRPRSVPLLRSSAAGPSFRRRRVLGRIPWRQGQGVLPGRSVRTRRTNL 700
S RP R AAG SFR +L +P+ G+ PG + TR L
Sbjct: 412 SWPRPEEFEPERFVAAGGSFRGGEMLEFMPFGAGRRACPGTPMATRVVTL 461
>07_01_1119 + 10331275-10331330,10331343-10331462,10332023-10332164
Length = 105
Score = 28.7 bits (61), Expect = 9.7
Identities = 15/55 (27%), Positives = 28/55 (50%)
Frame = +2
Query: 428 WSRRLQSNLQRHPCVRSIEHDHH*RQVGSRDPSVPADAVRTSHQRPRSVPLLRSS 592
+S R + +L+R + SI+ + + V RDP P+ A + + PLL+ +
Sbjct: 49 FSSRTKGSLKRRTALHSIKKKKYEKTVQQRDPKDPSRATKKKNNILALPPLLKDN 103
>03_06_0268 + 32758087-32758448,32758539-32759652
Length = 491
Score = 28.7 bits (61), Expect = 9.7
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +2
Query: 35 ILPASGXLGSSVVTVATHFLPPXAXTQRSAQSGXSKKK 148
+LPA+ LG + T A+H LPP Q +G K K
Sbjct: 27 VLPAAEALGMNWGTQASHPLPPKIVAQLLQDNGIKKVK 64
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,838,267
Number of Sequences: 37544
Number of extensions: 491652
Number of successful extensions: 1540
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1539
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3701409336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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