Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_C22
         (1210 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC036187-1|AAH36187.1|  904|Homo sapiens serine/arginine repetit...    33   2.7  
AL445686-4|CAI14682.1|  904|Homo sapiens serine/arginine repetit...    33   2.7  
AL445686-3|CAI14683.1|  913|Homo sapiens serine/arginine repetit...    33   2.7  
AL445648-3|CAH73090.1|  904|Homo sapiens serine/arginine repetit...    33   2.7  
AL445648-2|CAH73089.1|  913|Homo sapiens serine/arginine repetit...    33   2.7  
AF419855-1|AAP97290.1|  820|Homo sapiens Ser/Arg-related nuclear...    33   2.7  
AF048977-1|AAC09321.1|  820|Homo sapiens Ser/Arg-related nuclear...    33   2.7  

>BC036187-1|AAH36187.1|  904|Homo sapiens serine/arginine repetitive
           matrix 1 protein.
          Length = 904

 Score = 32.7 bits (71), Expect = 2.7
 Identities = 16/36 (44%), Positives = 23/36 (63%)
 Frame = -1

Query: 673 APRKYTLALTPWYSPQYSPPPEARTSSRTPEERYRA 566
           +PR+Y+  +   YSP  SPPP+ RT+S  P  + RA
Sbjct: 592 SPRRYSPPIQRRYSP--SPPPKRRTASPPPPPKRRA 625


>AL445686-4|CAI14682.1|  904|Homo sapiens serine/arginine repetitive
           matrix 1 protein.
          Length = 904

 Score = 32.7 bits (71), Expect = 2.7
 Identities = 16/36 (44%), Positives = 23/36 (63%)
 Frame = -1

Query: 673 APRKYTLALTPWYSPQYSPPPEARTSSRTPEERYRA 566
           +PR+Y+  +   YSP  SPPP+ RT+S  P  + RA
Sbjct: 592 SPRRYSPPIQRRYSP--SPPPKRRTASPPPPPKRRA 625


>AL445686-3|CAI14683.1|  913|Homo sapiens serine/arginine repetitive
           matrix 1 protein.
          Length = 913

 Score = 32.7 bits (71), Expect = 2.7
 Identities = 16/36 (44%), Positives = 23/36 (63%)
 Frame = -1

Query: 673 APRKYTLALTPWYSPQYSPPPEARTSSRTPEERYRA 566
           +PR+Y+  +   YSP  SPPP+ RT+S  P  + RA
Sbjct: 601 SPRRYSPPIQRRYSP--SPPPKRRTASPPPPPKRRA 634


>AL445648-3|CAH73090.1|  904|Homo sapiens serine/arginine repetitive
           matrix 1 protein.
          Length = 904

 Score = 32.7 bits (71), Expect = 2.7
 Identities = 16/36 (44%), Positives = 23/36 (63%)
 Frame = -1

Query: 673 APRKYTLALTPWYSPQYSPPPEARTSSRTPEERYRA 566
           +PR+Y+  +   YSP  SPPP+ RT+S  P  + RA
Sbjct: 592 SPRRYSPPIQRRYSP--SPPPKRRTASPPPPPKRRA 625


>AL445648-2|CAH73089.1|  913|Homo sapiens serine/arginine repetitive
           matrix 1 protein.
          Length = 913

 Score = 32.7 bits (71), Expect = 2.7
 Identities = 16/36 (44%), Positives = 23/36 (63%)
 Frame = -1

Query: 673 APRKYTLALTPWYSPQYSPPPEARTSSRTPEERYRA 566
           +PR+Y+  +   YSP  SPPP+ RT+S  P  + RA
Sbjct: 601 SPRRYSPPIQRRYSP--SPPPKRRTASPPPPPKRRA 634


>AF419855-1|AAP97290.1|  820|Homo sapiens Ser/Arg-related nuclear
           matrix protein protein.
          Length = 820

 Score = 32.7 bits (71), Expect = 2.7
 Identities = 16/36 (44%), Positives = 23/36 (63%)
 Frame = -1

Query: 673 APRKYTLALTPWYSPQYSPPPEARTSSRTPEERYRA 566
           +PR+Y+  +   YSP  SPPP+ RT+S  P  + RA
Sbjct: 590 SPRRYSPPIQRRYSP--SPPPKRRTASPPPPPKRRA 623


>AF048977-1|AAC09321.1|  820|Homo sapiens Ser/Arg-related nuclear
           matrix protein protein.
          Length = 820

 Score = 32.7 bits (71), Expect = 2.7
 Identities = 16/36 (44%), Positives = 23/36 (63%)
 Frame = -1

Query: 673 APRKYTLALTPWYSPQYSPPPEARTSSRTPEERYRA 566
           +PR+Y+  +   YSP  SPPP+ RT+S  P  + RA
Sbjct: 590 SPRRYSPPIQRRYSP--SPPPKRRTASPPPPPKRRA 623


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,678,152
Number of Sequences: 237096
Number of extensions: 2596253
Number of successful extensions: 13656
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13654
length of database: 76,859,062
effective HSP length: 92
effective length of database: 55,046,230
effective search space used: 17064331300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)