Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_C21
         (1185 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    30   0.55 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   1.7  
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc...    27   5.1  

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 30.3 bits (65), Expect = 0.55
 Identities = 14/28 (50%), Positives = 14/28 (50%)
 Frame = -3

Query: 547 FPPXGGGXPXPPPPXXGXGFFXGGGGXG 464
           F   GGG   PPP   G G F G GG G
Sbjct: 190 FGGFGGGSGGPPPGPGGFGGFGGFGGEG 217


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 14/36 (38%), Positives = 14/36 (38%)
 Frame = +1

Query: 427 PXPXGXXGXXXGXPPPPPXKKTXXPGXGGGGXXXPP 534
           P P        G PPPPP      PG  G G   PP
Sbjct: 748 PIPVPPPAPIMGGPPPPP----PPPGVAGAGPPPPP 779



 Score = 27.5 bits (58), Expect = 3.9
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +2

Query: 179 PXGXXPPXGGXXGPPPPPP 235
           P    PP     GPPPPPP
Sbjct: 762 PPPPPPPGVAGAGPPPPPP 780



 Score = 26.6 bits (56), Expect = 6.7
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = +3

Query: 462 GPXPPPPXKNPXPXXGGGGXGXPPP 536
           GP PPPP     P   G G   PPP
Sbjct: 760 GPPPPPPP----PGVAGAGPPPPPP 780



 Score = 26.2 bits (55), Expect = 8.9
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +2

Query: 179 PXGXXPPXGGXXGPPPPPP 235
           P    PP     GPPPPPP
Sbjct: 748 PIPVPPPAPIMGGPPPPPP 766


>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 379

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 12/34 (35%), Positives = 13/34 (38%)
 Frame = +3

Query: 471 PPPPXKNPXPXXGGGGXGXPPPXGGKXXSXKXGG 572
           PPPP     P  G GG     P G +      GG
Sbjct: 76  PPPPGAEGGPGAGFGGFPGAGPGGARTFHFNMGG 109


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.309    0.148    0.490 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,083,360
Number of Sequences: 5004
Number of extensions: 25643
Number of successful extensions: 107
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 637498240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.9 bits)