Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP26_F_C20
(1246 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 34 0.036
SPCC188.04c |spc25||kinetochore protein Spc25|Schizosaccharomyce... 33 0.11
SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 32 0.14
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 31 0.44
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr... 30 0.58
SPBC29A10.13 |atp7||F0-ATPase subunit D|Schizosaccharomyces pomb... 30 0.77
SPAC589.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 29 1.0
SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 29 1.0
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 29 1.3
SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7 |S... 29 1.3
SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos... 28 2.3
SPBC646.09c |int6|yin6|translation initiation factor eIF3e|Schiz... 28 2.3
SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyce... 28 2.3
SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces pomb... 27 4.1
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo... 27 4.1
SPBC1709.09 |||mitochondrial translation termination factor|Schi... 26 9.5
SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces... 26 9.5
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 34.3 bits (75), Expect = 0.036
Identities = 32/125 (25%), Positives = 57/125 (45%)
Frame = +1
Query: 274 QDFSKAWKDGSESVLQQLNAFAKXLQGALGDANGKAKEALEQSRQNIERTAEELRKAHPD 453
++++ WK +SVL N + + L + K EALE+ +Q +E +E K
Sbjct: 1329 KEYNSRWKLRFQSVL---NKYERVDPTQLEELK-KNCEALEKEKQELETKLQETAKETDT 1384
Query: 454 VEKNATALREKLQAAVQNTVQESQKLAKKVSSNVQETNEKLAPKIKAAYDDFAKNTQEVI 633
++ +L E+ V+N +E ++ K + NEK K++ FA QE+
Sbjct: 1385 FKQQVNSLNEE----VENLKKEVEQANTKNTRLAAAWNEKCENLKKSSLTRFAHLKQELT 1440
Query: 634 KKIQE 648
K +E
Sbjct: 1441 NKNKE 1445
>SPCC188.04c |spc25||kinetochore protein Spc25|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 238
Score = 32.7 bits (71), Expect = 0.11
Identities = 21/87 (24%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Frame = +1
Query: 280 FSKAWKDGSESVLQQLNAFAKXLQGALGDANGKAKEALEQSRQNIERTAEELRKAHPD-- 453
F + ++ + +L N + + L + +A KA+++LEQ+ + E L K H +
Sbjct: 27 FDRFLQEERKKLLNNKNEYLRQLS-EINEAQKKAEKSLEQTEARKQNFTELLEKEHEEQA 85
Query: 454 -VEKNATALREKLQAAVQNTVQESQKL 531
E+ + +EKL A ++ + S++L
Sbjct: 86 ITEQEIFSFQEKLDAMLKRKQKLSEEL 112
>SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 642
Score = 32.3 bits (70), Expect = 0.14
Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 4/99 (4%)
Frame = +1
Query: 199 IEHHTKEFHKPLXQQFNSLTKSKDAQDF---SKAWKDGSESVLQQLNAFAKXLQGALGDA 369
I+ K L Q+ +L ++++A++ ++ + D S S +L A AK A DA
Sbjct: 98 IQPDEKTLQDLLEQRQVALREAREAEEELQRARQYNDRSTSEALELEARAKK---AAQDA 154
Query: 370 NGKAKEALEQSRQNIERTAEELRK-AHPDVEKNATALRE 483
A E +++ +IER+A K A + E+ ATALRE
Sbjct: 155 E-LASERAREAQSSIERSASLREKQAREEAERAATALRE 192
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 30.7 bits (66), Expect = 0.44
Identities = 35/165 (21%), Positives = 70/165 (42%), Gaps = 9/165 (5%)
Frame = +1
Query: 223 HKPLXQQFNSLTKSKDAQDFSKAWKDGSESVLQQLNAFAKXLQGALGDANG---KAKEAL 393
H+ + +Q + +A + ES L N + L ++N K +E +
Sbjct: 625 HQTITKQLKDTSSKLQQLQLERANFEQKESTLSDENNDLRTKLLKLEESNKSLIKKQEDV 684
Query: 394 EQSRQNIERTAEELRKAHPDV---EKNATALREKLQ--AAVQNTVQESQKLAKKVSSNVQ 558
+ +NI+ E+LRK+ + + A LRE + T++ + S+ +
Sbjct: 685 DSLEKNIQTLKEDLRKSEEALRFSKLEAKNLREVIDNLKGKHETLEAQRNDLHSSLSDAK 744
Query: 559 ETNEKLAPKIKAAYDDFAKNTQEVIKKIQEAANAKQ-*ASILNSH 690
TN L+ ++ + +D + T V Q++ KQ S++NS+
Sbjct: 745 NTNAILSSELTKSSEDVKRLTANVETLTQDSKAMKQSFTSLVNSY 789
>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 633
Score = 30.3 bits (65), Expect = 0.58
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Frame = +1
Query: 376 KAKEALE---QSRQNIERTAEELRKAHPDVEKNATALREKLQAAV-----QNTVQESQKL 531
K KE +E Q ++ +ER E LRK D K+ + +AA+ + + E QKL
Sbjct: 128 KEKEEMEGSLQGKEKLEREVENLRK-ELDKYKDLVETEAEKRAAITKEECEKSWLEQQKL 186
Query: 532 AKKVSSNVQETNEKLAPKIK 591
K + T +KL KI+
Sbjct: 187 YKDMEQENASTIQKLTSKIR 206
>SPBC29A10.13 |atp7||F0-ATPase subunit D|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 175
Score = 29.9 bits (64), Expect = 0.77
Identities = 25/88 (28%), Positives = 44/88 (50%)
Frame = +1
Query: 199 IEHHTKEFHKPLXQQFNSLTKSKDAQDFSKAWKDGSESVLQQLNAFAKXLQGALGDANGK 378
IE K F KP+ NS K+ +A F +G++ ++ + A + L L +
Sbjct: 73 IESSMKSF-KPVKIDLNSQLKAINA--FEAKASEGAKKNVELVKAELQNLSATLKN---- 125
Query: 379 AKEALEQSRQNIERTAEELRKAHPDVEK 462
+EQ+R E T E++++A P++EK
Sbjct: 126 ----IEQARPTEEITIEDMKQAVPEIEK 149
>SPAC589.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 168
Score = 29.5 bits (63), Expect = 1.0
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = +1
Query: 295 KDGSESVLQQLNAFAKXLQGALGDANGKAKEALEQSRQNIERTAEE 432
KDG+++ +LN FAK L + + +A + + IE+++ E
Sbjct: 111 KDGTDAFANELNLFAKKLGFSKNSFDARALDTESEDETEIEKSSSE 156
>SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 419
Score = 29.5 bits (63), Expect = 1.0
Identities = 14/65 (21%), Positives = 31/65 (47%)
Frame = +1
Query: 376 KAKEALEQSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQESQKLAKKVSSNV 555
KA + LE+ ++ E + EE+ H + T+ + + + +QE ++ K +
Sbjct: 353 KACKDLEEVSKSYEESREEIEALHETFTEEVTSFQSTKRLKEEKIIQEKSRVDKMIDEYR 412
Query: 556 QETNE 570
Q+ +E
Sbjct: 413 QKLSE 417
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 29.1 bits (62), Expect = 1.3
Identities = 21/88 (23%), Positives = 46/88 (52%)
Frame = +1
Query: 391 LEQSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQESQKLAKKVSSNVQETNE 570
++ Q+IE T L K D+E++ +++ + V + Q+ ++++ +Q+T E
Sbjct: 496 MKTQEQSIELT--RLYKQLQDIEEDYENKLMRMEQQWREDVDQLQEYVEEITQELQDTKE 553
Query: 571 KLAPKIKAAYDDFAKNTQEVIKKIQEAA 654
L+ K + DD+ +EV+ K++ A
Sbjct: 554 VLSKSSKES-DDY----EEVVGKLRTEA 576
>SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 272
Score = 29.1 bits (62), Expect = 1.3
Identities = 17/69 (24%), Positives = 38/69 (55%)
Frame = +1
Query: 376 KAKEALEQSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQESQKLAKKVSSNV 555
K+++ LE S Q +E E + P+V++ +EK ++ V+ +E +K+S N+
Sbjct: 132 KSEKPLETS-QKVEIETVETKPGEPEVKQETNLQKEKKESKVKLESKE-----EKISRNL 185
Query: 556 QETNEKLAP 582
+ ++ ++P
Sbjct: 186 RSSSRSISP 194
>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
Plc1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 899
Score = 28.3 bits (60), Expect = 2.3
Identities = 35/161 (21%), Positives = 61/161 (37%), Gaps = 3/161 (1%)
Frame = +1
Query: 169 RRXAPDFFKDIEHHTKEFHKPLXQQFNSLT---KSKDAQDFSKAWKDGSESVLQQLNAFA 339
++ DFFK + ++ H L ++ NSL+ +K + G + +LN
Sbjct: 56 KKSEQDFFKMLSSRDRDAHSTLRKRSNSLSSFLSTKSTSASENKFHGGLNWLSLKLNLLL 115
Query: 340 KXLQGALGDANGKAKEALEQSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQE 519
+ LQG + A S + E V +N + R+ L V ++Q
Sbjct: 116 R-LQGRMNSAR------TNTSMNPYSCDSNENLSTLSSVNQNFNS-RQLLATIVPESIQN 167
Query: 520 SQKLAKKVSSNVQETNEKLAPKIKAAYDDFAKNTQEVIKKI 642
L + V++ L P + Y KNT + KK+
Sbjct: 168 GCSLLRITKKKVRQRKVSLDP--ISGYLMLDKNTGKAYKKL 206
>SPBC646.09c |int6|yin6|translation initiation factor
eIF3e|Schizosaccharomyces pombe|chr 2|||Manual
Length = 501
Score = 28.3 bits (60), Expect = 2.3
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Frame = +1
Query: 274 QDFSKAWKDGSESVLQQLNAFAKXLQGALGD-ANGKAKEALEQSR-QNIERTAE 429
+D + A+ + SVLQ+L+ + +QG LG N AL Q + QN++ E
Sbjct: 79 EDMANAFAEKRRSVLQELSELEEEVQGILGVLENPDLIAALRQDKGQNLQHLQE 132
>SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 406
Score = 28.3 bits (60), Expect = 2.3
Identities = 37/159 (23%), Positives = 68/159 (42%), Gaps = 8/159 (5%)
Frame = +1
Query: 196 DIEHHTKEFHKP-LXQQFNSLTKSKDAQDFSKAWKDGSESVLQQLNAFAKXLQGALGDAN 372
D+ +K KP L + S D+++ S+ D ++ L+ +NA Q +
Sbjct: 8 DLAFFSKPIKKPPLNYAKQLIASSSDSEEESEL--DTNKQALEHINA-----QKNITHNE 60
Query: 373 GKAKEALEQSRQNIERTAEELRKAHPDVEKNATAL--REKLQAAVQNTVQE-----SQKL 531
K+ E L SRQ+ A+E + D NA R ++A+ Q + +
Sbjct: 61 NKSAEPL--SRQSTILDADEGNQDVSDTTPNACLNEGRHSPKSAISCVTQPVSPVYNTRA 118
Query: 532 AKKVSSNVQETNEKLAPKIKAAYDDFAKNTQEVIKKIQE 648
A + +N + L+ DDFA+ +E+ +++QE
Sbjct: 119 AANLRNNSINSEAALSTTSSLLDDDFARRLEEIDRQVQE 157
>SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 631
Score = 27.5 bits (58), Expect = 4.1
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -1
Query: 406 ASTVPKPPWPCRSRLRALPG 347
AST+ K PWP + L +PG
Sbjct: 38 ASTLEKEPWPASTALLVMPG 57
>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
Swr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1288
Score = 27.5 bits (58), Expect = 4.1
Identities = 27/108 (25%), Positives = 48/108 (44%)
Frame = +1
Query: 304 SESVLQQLNAFAKXLQGALGDANGKAKEALEQSRQNIERTAEELRKAHPDVEKNATALRE 483
S + + A K L GA KAKE ++ R +RTA E+RK +E+ R
Sbjct: 143 SRRISGMILAHFKRLSGA---DEKKAKEEDKRIRLLAKRTAWEIRKKWKVIEREVRRRRA 199
Query: 484 KLQAAVQNTVQESQKLAKKVSSNVQETNEKLAPKIKAAYDDFAKNTQE 627
+ A Q + Q +++ ++ + + L +I+ A + + T E
Sbjct: 200 ERAAEAQRVAGKEQ-----LANILKHSTDLLEARIERANINISAQTSE 242
>SPBC1709.09 |||mitochondrial translation termination
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 244
Score = 26.2 bits (55), Expect = 9.5
Identities = 18/71 (25%), Positives = 35/71 (49%)
Frame = +1
Query: 406 QNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQESQKLAKKVSSNVQETNEKLAPK 585
+NI + E+ R + NA+ + K Q + T++ Q+LAK + +++ E+L+
Sbjct: 136 KNILKAIEDSRYPFVANKLNASTIEVKPQ---RTTLESRQQLAKVLEGYAKDSREQLSAM 192
Query: 586 IKAAYDDFAKN 618
+ AKN
Sbjct: 193 RTELKKEIAKN 203
>SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 172
Score = 26.2 bits (55), Expect = 9.5
Identities = 13/86 (15%), Positives = 41/86 (47%)
Frame = +1
Query: 382 KEALEQSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQESQKLAKKVSSNVQE 561
K ++R+N++ + + P+++ + + +L+ +++++ Q + + V+E
Sbjct: 81 KRRNRKARENLKVNVSSIGEVLPEIDLDISVANSRLKPVIKDSLSSKQTKSSMKRNTVEE 140
Query: 562 TNEKLAPKIKAAYDDFAKNTQEVIKK 639
E+ +K + F N E +++
Sbjct: 141 I-ERFQAILK--HPSFVSNPLETVRE 163
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,471,820
Number of Sequences: 5004
Number of extensions: 34603
Number of successful extensions: 162
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 677341880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -