Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP26_F_C18
(1250 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 133 6e-32
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 50 9e-07
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 49 2e-06
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 46 1e-05
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 46 1e-05
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 46 1e-05
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 45 2e-05
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 45 3e-05
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 44 6e-05
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 44 6e-05
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 43 8e-05
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 43 1e-04
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 41 3e-04
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 41 4e-04
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 39 0.002
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 38 0.003
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 38 0.004
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 37 0.007
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 36 0.009
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 36 0.009
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 36 0.012
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 36 0.015
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 34 0.047
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 33 0.062
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 33 0.062
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 33 0.062
SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|ch... 33 0.062
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 32 0.14
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 31 0.25
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 31 0.33
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 31 0.33
SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein Cwf23|Schiz... 30 0.58
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 30 0.58
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 30 0.77
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 29 1.8
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ... 27 4.1
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 27 4.1
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 27 7.2
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 133 bits (321), Expect = 6e-32
Identities = 64/162 (39%), Positives = 93/162 (57%), Gaps = 4/162 (2%)
Frame = +1
Query: 250 KLFVGGLSWXPTXKXLRXHFGAYGEIXXINVKXDPNTGRSRGFAFIVFKAPXSIXKVMAA 429
K+F+GGL+W T LR +F +GE+ V D TGRSRGF F+ FK P + +VM+
Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSK 223
Query: 430 GEHT----INNXXXXXXXXXXRHGKXFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKT 597
H I+ + K FVGG+ + +++E RNFF++FG +L+ + DK
Sbjct: 224 EHHLDGKIIDPKRAIPREEQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKD 283
Query: 598 KNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPK 723
+ +GF F+T+E+E V + P TI GK V+VKRATPK
Sbjct: 284 TGRPRGFGFVTYENESAVEATMSQPYITIHGKPVEVKRATPK 325
Score = 70.9 bits (166), Expect = 3e-13
Identities = 30/81 (37%), Positives = 55/81 (67%)
Frame = +1
Query: 487 GKXFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 666
GK F+GGL+ E +DD +R++F +FG +L+ + D T + +GF F+TF++ + VN+++
Sbjct: 163 GKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVM- 221
Query: 667 TPKRTIGGKEVDVKRATPKPD 729
+ + + GK +D KRA P+ +
Sbjct: 222 SKEHHLDGKIIDPKRAIPREE 242
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 49.6 bits (113), Expect = 9e-07
Identities = 41/180 (22%), Positives = 70/180 (38%), Gaps = 23/180 (12%)
Frame = +1
Query: 253 LFVGGLSWXPTXKXLRXHFGAYGEIXXINVKXDPNTGRSRGFAFIVFKAPXSIXKVMAA- 429
+FVG LSW + L F YG I V D +GRS+G+ ++ F+ P + +AA
Sbjct: 265 VFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAAN 324
Query: 430 GEHTINNXXXXXXXXXXR------HGKXFVGGLSSEIS----------------DDEIRN 543
G I+ R + + G ++S +D++
Sbjct: 325 GTKEIDGRMVNLDLSNPRPANPQPYAQQRAGNFGDQLSEPSDTVFVGNLSFNATEDDLST 384
Query: 544 FFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPK 723
F G I + +P D + KGF ++TF ++ I G+ + +TP+
Sbjct: 385 AFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVEMNGHFIAGRPCRLDFSTPR 444
Score = 46.8 bits (106), Expect = 6e-06
Identities = 27/85 (31%), Positives = 36/85 (42%)
Frame = +1
Query: 253 LFVGGLSWXPTXKXLRXHFGAYGEIXXINVKXDPNTGRSRGFAFIVFKAPXSIXKVMAAG 432
+FVG LS+ T L FG G+I I + DP +GR +GF ++ F S K +
Sbjct: 368 VFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVEMN 427
Query: 433 EHTINNXXXXXXXXXXRHGKXFVGG 507
H I R G GG
Sbjct: 428 GHFIAGRPCRLDFSTPRTGGGSRGG 452
Score = 41.5 bits (93), Expect = 2e-04
Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Frame = +1
Query: 496 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVN-DLLKTP 672
FVG LS + D + F E+GTI+ + D + KG+ ++ FE+ + +
Sbjct: 266 FVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAANG 325
Query: 673 KRTIGGKEVDVKRATPKP 726
+ I G+ V++ + P+P
Sbjct: 326 TKEIDGRMVNLDLSNPRP 343
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 48.8 bits (111), Expect = 2e-06
Identities = 25/82 (30%), Positives = 47/82 (57%), Gaps = 5/82 (6%)
Frame = +1
Query: 490 KXFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRK----GFCFITFESEQVVND 657
+ FVG LS+ EIR+ F GT+ +V +PF + + + G F+TF +++ V+
Sbjct: 45 RVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPSGIAFVTFNNQEDVDK 104
Query: 658 LLKTPK-RTIGGKEVDVKRATP 720
++T +T+ +E+ V++A P
Sbjct: 105 AIETLNGKTLDDREIVVQKARP 126
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 46.0 bits (104), Expect = 1e-05
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Frame = +1
Query: 490 KXFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF-ESEQVVNDLLK 666
+ F+ L+ ++D++++ F FG + +V MP DK N KGF +I F +++ V L+
Sbjct: 324 RLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLE 383
Query: 667 TPKRTIGGKEVDV 705
+ G+ + V
Sbjct: 384 LDAKPFQGRLLHV 396
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 45.6 bits (103), Expect = 1e-05
Identities = 21/63 (33%), Positives = 33/63 (52%)
Frame = +1
Query: 253 LFVGGLSWXPTXKXLRXHFGAYGEIXXINVKXDPNTGRSRGFAFIVFKAPXSIXKVMAAG 432
LFVG L + T L+ HFG G+I + + +TG+ +GF F+ F + K M G
Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPDIDTCMKAMELG 289
Query: 433 EHT 441
++
Sbjct: 290 HNS 292
Score = 32.3 bits (70), Expect = 0.14
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +1
Query: 496 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 633
FVG L E +D +++ F + G I V + + + KGF F+ F
Sbjct: 231 FVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDF 276
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 45.6 bits (103), Expect = 1e-05
Identities = 22/79 (27%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Frame = +1
Query: 484 HGKXFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF-ESEQVVNDL 660
H + FVG L ++++D+ + FSE+ ++++ ++ D+ + + +GF F++F +S+Q +
Sbjct: 29 HFRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDR-EGKTRGFGFVSFKDSDQFLKAW 87
Query: 661 LKTPKRTIGGKEVDVKRAT 717
+ + IG + V + RAT
Sbjct: 88 REKNGKYIGSRPVKLSRAT 106
Score = 30.3 bits (65), Expect = 0.58
Identities = 17/49 (34%), Positives = 23/49 (46%)
Frame = +1
Query: 250 KLFVGGLSWXPTXKXLRXHFGAYGEIXXINVKXDPNTGRSRGFAFIVFK 396
+LFVG L + L F Y + V D G++RGF F+ FK
Sbjct: 31 RLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRD-REGKTRGFGFVSFK 78
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 45.2 bits (102), Expect = 2e-05
Identities = 38/142 (26%), Positives = 58/142 (40%), Gaps = 8/142 (5%)
Frame = +1
Query: 253 LFVGGLSWXPTXKXLRXHFGAYGEIXXINVKXDPNTGRSRGFAFIVFKAPXSIXKVMAAG 432
L+VG L T L F + G + I V D T RS G+A++ F K +
Sbjct: 82 LYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDEL 141
Query: 433 EHTINNXXXXXXXXXXRH--------GKXFVGGLSSEISDDEIRNFFSEFGTILEVEMPF 588
+T+ R G F+ L I + + + FS FG IL ++
Sbjct: 142 NYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAV 201
Query: 589 DKTKNQRKGFCFITFESEQVVN 654
D+ N KG+ F+ F+S + N
Sbjct: 202 DELGN-AKGYGFVHFDSVESAN 222
Score = 32.7 bits (71), Expect = 0.11
Identities = 16/57 (28%), Positives = 26/57 (45%)
Frame = +1
Query: 253 LFVGGLSWXPTXKXLRXHFGAYGEIXXINVKXDPNTGRSRGFAFIVFKAPXSIXKVM 423
LF+ L + L+ F A+G I + D G+S+GF F+ + P K +
Sbjct: 366 LFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQ-GKSKGFGFVCYTTPEEANKAV 421
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 44.8 bits (101), Expect = 3e-05
Identities = 20/74 (27%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Frame = +1
Query: 496 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES-EQVVNDLLKTP 672
FV G++S + +DE++ FS+FGT+ V + + +GF F++F + E+ + +
Sbjct: 104 FVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNLN 163
Query: 673 KRTIGGKEVDVKRA 714
+ G+ ++V++A
Sbjct: 164 SQEFYGRVLNVQKA 177
Score = 33.5 bits (73), Expect = 0.062
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +1
Query: 253 LFVGGLSWXPTXKXLRXHFGAYGEIXXINVKXDPNTGRSRGFAFIVF 393
LFV G++ L+ F +G + + + +P T SRGF F+ F
Sbjct: 103 LFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSF 149
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 43.6 bits (98), Expect = 6e-05
Identities = 20/61 (32%), Positives = 31/61 (50%)
Frame = +1
Query: 253 LFVGGLSWXPTXKXLRXHFGAYGEIXXINVKXDPNTGRSRGFAFIVFKAPXSIXKVMAAG 432
+FVG L++ + L +FG G I + + DP T +GFA+I FK + K +
Sbjct: 272 VFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVDKALLLN 331
Query: 433 E 435
E
Sbjct: 332 E 332
Score = 39.1 bits (87), Expect = 0.001
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Frame = +1
Query: 496 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVND-LLKTP 672
FVG L+ E ++ + +F + G+I V + D N KGF +I F+ V+ LL
Sbjct: 273 FVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVDKALLLNE 332
Query: 673 KRTIGGKEVDVKRA-TPKP 726
K+ G+ + + RA + KP
Sbjct: 333 KKMPEGRTLRIMRAKSTKP 351
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 43.6 bits (98), Expect = 6e-05
Identities = 23/79 (29%), Positives = 37/79 (46%)
Frame = +1
Query: 433 EHTINNXXXXXXXXXXRHGKXFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRK 612
E TI + G +VG L + ++R +FS+FG +L + M ++ K
Sbjct: 87 EKTIKKKVSENKNLQKKKGVLYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSK 146
Query: 613 GFCFITFESEQVVNDLLKT 669
+ FI FES V N + +T
Sbjct: 147 HYAFIEFESLDVANVVAET 165
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 43.2 bits (97), Expect = 8e-05
Identities = 16/50 (32%), Positives = 32/50 (64%)
Frame = +1
Query: 496 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 645
++G L ++++D+I FSEFG +++ + DK + KGF F+ +E ++
Sbjct: 34 YIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQR 83
Score = 36.3 bits (80), Expect = 0.009
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = +1
Query: 253 LFVGGLSWXPTXKXLRXHFGAYGEIXXINVKXDPNTGRSRGFAFIVFK 396
+++G L + + F +GE IN+ D TG+S+GFAF+ ++
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYE 80
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 42.7 bits (96), Expect = 1e-04
Identities = 17/60 (28%), Positives = 31/60 (51%)
Frame = +1
Query: 244 AXKLFVGGLSWXPTXKXLRXHFGAYGEIXXINVKXDPNTGRSRGFAFIVFKAPXSIXKVM 423
A ++VG + + T + L+ HF + G + + + D TG +GFA+I F P + +
Sbjct: 54 AQSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNAL 113
Score = 35.1 bits (77), Expect = 0.020
Identities = 15/56 (26%), Positives = 30/56 (53%)
Frame = +1
Query: 496 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 663
+VG + ++ +E+++ F+ G++ V + DK KGF +I F +V + L
Sbjct: 58 YVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNAL 113
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 41.1 bits (92), Expect = 3e-04
Identities = 20/54 (37%), Positives = 31/54 (57%)
Frame = +1
Query: 250 KLFVGGLSWXPTXKXLRXHFGAYGEIXXINVKXDPNTGRSRGFAFIVFKAPXSI 411
++FV +S T + LR HF ++GE+ +++K +P TG S G I F SI
Sbjct: 95 QVFVSNISPLVTSEQLRYHFKSFGEVFDLDLKLNPYTGTSLGLCCISFDKRSSI 148
Score = 32.7 bits (71), Expect = 0.11
Identities = 11/53 (20%), Positives = 27/53 (50%)
Frame = +1
Query: 496 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVN 654
FV +S ++ +++R F FG + ++++ + G C I+F+ ++
Sbjct: 97 FVSNISPLVTSEQLRYHFKSFGEVFDLDLKLNPYTGTSLGLCCISFDKRSSIS 149
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 40.7 bits (91), Expect = 4e-04
Identities = 17/50 (34%), Positives = 28/50 (56%)
Frame = +1
Query: 253 LFVGGLSWXPTXKXLRXHFGAYGEIXXINVKXDPNTGRSRGFAFIVFKAP 402
LFVG L + + L+ HF G++ + + D +GR +G+AF+ F P
Sbjct: 94 LFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQKGYAFVEFINP 143
Score = 38.3 bits (85), Expect = 0.002
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = +1
Query: 496 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 633
FVG L + S + ++ F G + V +P DKT ++KG+ F+ F
Sbjct: 95 FVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQKGYAFVEF 140
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 38.7 bits (86), Expect = 0.002
Identities = 21/62 (33%), Positives = 31/62 (50%)
Frame = +1
Query: 496 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK 675
+VG LS ++++I FS+ G I + M D+ GFCF+ + Q D LK
Sbjct: 35 YVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEYFENQDALDSLKYIS 94
Query: 676 RT 681
RT
Sbjct: 95 RT 96
Score = 27.1 bits (57), Expect = 5.4
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +1
Query: 253 LFVGGLSWXPTXKXLRXHFGAYGEIXXINVKXDPNTGRSRGFAFIVF 393
++VG LS+ T + + F GEI I + D T GF F+ +
Sbjct: 34 VYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEY 80
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 37.9 bits (84), Expect = 0.003
Identities = 15/33 (45%), Positives = 24/33 (72%)
Frame = +1
Query: 496 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDK 594
FVGGL+S +S+ +++ F FG IL +++PF K
Sbjct: 300 FVGGLASNLSEKDLQVCFQPFGRILNIKIPFGK 332
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 37.5 bits (83), Expect = 0.004
Identities = 16/45 (35%), Positives = 26/45 (57%)
Frame = +1
Query: 499 VGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 633
V LS + ++E+R+ F FG I V + DK + KGF F+++
Sbjct: 206 VTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSY 250
Score = 32.7 bits (71), Expect = 0.11
Identities = 18/53 (33%), Positives = 27/53 (50%)
Frame = +1
Query: 235 RAXAXKLFVGGLSWXPTXKXLRXHFGAYGEIXXINVKXDPNTGRSRGFAFIVF 393
R + L V LS + LR F +G I + + D TGR++GFAF+ +
Sbjct: 198 RDDSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSY 250
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 36.7 bits (81), Expect = 0.007
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +1
Query: 253 LFVGGLSWXPTXKXLRXHFGAYGEIXXINVKXDPNTGRSRGFAFIVFK 396
+F+ LS+ + F YG I I V + TG+S G+AF+VF+
Sbjct: 102 MFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFE 149
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 36.3 bits (80), Expect = 0.009
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Frame = +1
Query: 496 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK 675
FV L+ + D++ NFFS+ G I + + + +G+ F+TF + K K
Sbjct: 8 FVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKELK 67
Query: 676 -RTIGGKEVDVKRATPK 723
+ + G+ + + ATP+
Sbjct: 68 NKKLHGRILRLDFATPR 84
Score = 32.3 bits (70), Expect = 0.14
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +1
Query: 253 LFVGGLSWXPTXKXLRXHFGAYGEIXXINVKXDPNTGRSRGFAFIVFK 396
+FV L + T + L HF +G + + DP T RS G FI F+
Sbjct: 279 VFVRNLLFECTEQELYNHFRQFGPLAYAKLVKDPATDRSLGRGFIKFR 326
Score = 31.9 bits (69), Expect = 0.19
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +1
Query: 253 LFVGGLSWXPTXKXLRXHFGAYGEIXXINVKXDPNTGRSRGFAFIVF 393
LFV L++ L F G I V +P TG +RG+ F+ F
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTF 53
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 36.3 bits (80), Expect = 0.009
Identities = 17/75 (22%), Positives = 39/75 (52%)
Frame = +1
Query: 499 VGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKR 678
VG LS +++++++ +FF E + + + D + +GF ++ FE+ ++ L
Sbjct: 98 VGNLSFDLTENDLGDFFGE--GVTSIRLVIDPLTERSRGFGYVEFETADTLSAALALSGE 155
Query: 679 TIGGKEVDVKRATPK 723
+ G+ V + A P+
Sbjct: 156 DLMGRPVRITVAEPR 170
Score = 33.5 bits (73), Expect = 0.062
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = +1
Query: 259 VGGLSWXPTXKXLRXHFGAYGEIXXINVKXDPNTGRSRGFAFIVFKAPXSIXKVMA-AGE 435
VG LS+ T L FG + I + DP T RSRGF ++ F+ ++ +A +GE
Sbjct: 98 VGNLSFDLTENDLGDFFGE--GVTSIRLVIDPLTERSRGFGYVEFETADTLSAALALSGE 155
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 35.9 bits (79), Expect = 0.012
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Frame = +1
Query: 499 VGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF-ESEQVVNDLLKTPK 675
V L+ ++ + I F +G I + MP K KG+C+I + +Q N + K
Sbjct: 103 VENLTRNVTKEHIAEIFGIYGLIDHIFMPIYKKSELNKGYCYIEYVYHDQAANAVDKMNN 162
Query: 676 RTIGGKE--VDVKR 711
+ G+E V +KR
Sbjct: 163 AELDGEELFVSIKR 176
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 35.5 bits (78), Expect = 0.015
Identities = 14/30 (46%), Positives = 22/30 (73%)
Frame = +1
Query: 496 FVGGLSSEISDDEIRNFFSEFGTILEVEMP 585
FVGGLS +S++E++ F FG I+ V++P
Sbjct: 306 FVGGLSKFVSEEELKYLFQNFGEIVYVKIP 335
Score = 26.6 bits (56), Expect = 7.2
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Frame = +1
Query: 235 RAXAXKLFVGGLSWXPTXKXLRXHFGA-YGEIXXINVKXDPNTGRSRGFAFIVF 393
+A +FVG LS + F + Y + DP T SRG+ F+ F
Sbjct: 182 KASEYSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRF 235
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 33.9 bits (74), Expect = 0.047
Identities = 20/80 (25%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Frame = +1
Query: 490 KXFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTK-NQRKGFCFITFESEQVVNDLLK 666
+ +VGGLSS I ++ + FS FG++ +E+ T + F ++ F +++ K
Sbjct: 6 RIYVGGLSSSIESSDLESRFSRFGSVSNLEIINKSTPVGTIQRFAYLNFRTDEDKWQKCK 65
Query: 667 T--PKRTIGGKEVDVKRATP 720
+ T G ++ ++ A P
Sbjct: 66 SYLSNATFKGSKLRIEEARP 85
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 33.5 bits (73), Expect = 0.062
Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 14/91 (15%)
Frame = +1
Query: 496 FVGGLSSEISDDEIRNFFSEFGTI-------------LEVEMPFDKTKNQRKGFCFITFE 636
+VG + S +SD+EI FS++G + E PF KN + + F+ F
Sbjct: 20 YVGNIDSRLSDEEIIKHFSKYGQVESIFRRLLDSFYPKEKAKPFKPPKNGVQ-YGFVKFV 78
Query: 637 SEQVVNDLLKTPK-RTIGGKEVDVKRATPKP 726
+ + + ++LK K T+G +++ +K P
Sbjct: 79 NAESIEEVLKDAKGMTLGQRKLTIKARVVNP 109
Score = 27.1 bits (57), Expect = 5.4
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +1
Query: 307 FGAYGEIXXINVKXDPNTGRSRGFAFIVFK 396
F +G I + PN+G S+G+ F+ F+
Sbjct: 404 FSPFGSILSSMLACYPNSGISKGYGFVAFR 433
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 33.5 bits (73), Expect = 0.062
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +1
Query: 253 LFVGGLSWXPTXKXLRXHFGAYGEIXXINVKXDPNTGRSRGFAFIVFK 396
++VG L W + + L F G + + +P TGRS+GF + F+
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEP-TGRSKGFGVVQFE 328
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 33.5 bits (73), Expect = 0.062
Identities = 17/78 (21%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Frame = +1
Query: 496 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFIT-FESEQVVNDLLKTP 672
FVG + ++S+ ++ F++ G + ++ D KG+ F F+SE + K
Sbjct: 10 FVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKLN 69
Query: 673 KRTIGGKEVDVKRATPKP 726
+G +++ V+ + P
Sbjct: 70 NSELGPRKIRVEFPSNDP 87
Score = 30.3 bits (65), Expect = 0.58
Identities = 12/47 (25%), Positives = 22/47 (46%)
Frame = +1
Query: 253 LFVGGLSWXPTXKXLRXHFGAYGEIXXINVKXDPNTGRSRGFAFIVF 393
+FVG + + + + + F G + + DP TG +G+ F F
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEF 55
>SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 274
Score = 33.5 bits (73), Expect = 0.062
Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Frame = +1
Query: 499 VGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKR 678
V L ++ + ++ + F F I V M +D+ + +G C + FE+ Q D KT +
Sbjct: 89 VENLHYQVLEKDVLSLFENFHPI-RVIMNYDRA-GRSEGSCDVYFETSQDAEDAQKTLQS 146
Query: 679 T-IGGKEVDVKRATP 720
T + G E+ + + +P
Sbjct: 147 TNLKGSEIQISKKSP 161
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 32.3 bits (70), Expect = 0.14
Identities = 12/50 (24%), Positives = 24/50 (48%)
Frame = +1
Query: 490 KXFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 639
K ++ L + +D++ FG +L ++ + KGFCF F++
Sbjct: 311 KIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKN 360
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 31.5 bits (68), Expect = 0.25
Identities = 17/48 (35%), Positives = 28/48 (58%)
Frame = +1
Query: 253 LFVGGLSWXPTXKXLRXHFGAYGEIXXINVKXDPNTGRSRGFAFIVFK 396
LF+ LS+ T + + FG YG + I + NT ++RG AF+V++
Sbjct: 14 LFIKNLSFKITAEEMYDLFGRYGPVRQIRL---GNTVQTRGTAFVVYE 58
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 31.1 bits (67), Expect = 0.33
Identities = 13/76 (17%), Positives = 38/76 (50%)
Frame = +1
Query: 499 VGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKR 678
V G+ E +++++ + F++FG + + + D+ KG+ I + + + +
Sbjct: 14 VTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEYATLEQAQKAVDEKNL 73
Query: 679 TIGGKEVDVKRATPKP 726
++ ++++V A +P
Sbjct: 74 SLLDEKLEVDFAFLEP 89
>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 589
Score = 31.1 bits (67), Expect = 0.33
Identities = 15/61 (24%), Positives = 31/61 (50%)
Frame = +1
Query: 523 SDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVD 702
+++ IR+FFS+FG + +VE+ N C + F S + N+ +P+ + +
Sbjct: 255 NEENIRSFFSKFGVLEKVEL------NPTHHSCVLEFTSHEAANNAWSSPEPIFNNRFIK 308
Query: 703 V 705
+
Sbjct: 309 I 309
>SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein
Cwf23|Schizosaccharomyces pombe|chr 3|||Manual
Length = 289
Score = 30.3 bits (65), Expect = 0.58
Identities = 12/43 (27%), Positives = 26/43 (60%)
Frame = +1
Query: 511 SSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 639
+ +++D +R+ +S FGT+ V + D +K ++ + I FE+
Sbjct: 176 ADQVNDAYLRSIYSSFGTLQNVVIQKDISKEKKYVYSIIVFET 218
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 30.3 bits (65), Expect = 0.58
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = +1
Query: 496 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 645
++ GL SD+ + + + FG + + D N KG+ F FE E+
Sbjct: 299 YIRGLPPNTSDENLLLYTNRFGKVSSSKAIIDMETNLCKGYGFACFEEEK 348
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 29.9 bits (64), Expect = 0.77
Identities = 10/46 (21%), Positives = 25/46 (54%)
Frame = +1
Query: 496 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 633
+VG + E++++++ + F + G + ++ D Q KG+ F +
Sbjct: 8 YVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEY 53
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 28.7 bits (61), Expect = 1.8
Identities = 34/149 (22%), Positives = 57/149 (38%), Gaps = 20/149 (13%)
Frame = +1
Query: 253 LFVGGLSWXPTXKXLRXHFGAYGEIXXINVKXDPNTGRSRGFAFIVFKAPXSIXKVMA-- 426
+FV L+ T + L F G + + D +GRS+G A++ F S+ +A
Sbjct: 242 VFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAAIALS 301
Query: 427 ----AGEHTINNXXXXXXXXXXRHGKXFVGGLSSEI--------------SDDEIRNFFS 552
G I R S+EI +D++++ F
Sbjct: 302 GKRLLGLPVIVQLTEAEKNRKAREAAELARAASAEIPFHRLCVSNIHFNLTDEDVKAIFE 361
Query: 553 EFGTILEVEMPFDKTKNQRKGFCFITFES 639
FG I V + D +N+ KGF +I + +
Sbjct: 362 PFGDIEFVHLQRD-DQNRSKGFGYIQYRN 389
>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1150
Score = 27.5 bits (58), Expect = 4.1
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +1
Query: 508 LSSEISDDEIRNFFSEFGTILEVEMPFDKTKN 603
L+S ++E+RN FSEF LE E+ F+ ++
Sbjct: 958 LNSFFDNEELRNEFSEFIQHLESEVSFNSLRS 989
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 27.5 bits (58), Expect = 4.1
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +1
Query: 253 LFVGGLSWXPTXKXLRXHFGAYGEIXXI-NVKXDPNTGRSRGFAFIVF 393
LFVG L + L F A G++ V D N GRS+G+ F+ +
Sbjct: 101 LFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDEN-GRSKGYGFVSY 147
Score = 26.2 bits (55), Expect = 9.5
Identities = 11/48 (22%), Positives = 24/48 (50%)
Frame = +1
Query: 496 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 639
FVG L + + + + FS G +++ + KG+ F++++S
Sbjct: 102 FVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDS 149
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 26.6 bits (56), Expect = 7.2
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +1
Query: 496 FVGGLSSEISDDEIRNFFSEFGTILEVEM 582
F+G L + I++DEIR FG I ++++
Sbjct: 209 FLGNLPNGITEDEIREDLEPFGPIDQIKI 237
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,059,943
Number of Sequences: 5004
Number of extensions: 46395
Number of successful extensions: 176
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 677627698
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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