Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_C16
         (1249 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    30   0.77 
SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces pomb...    29   1.0  
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa...    28   2.4  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    28   3.1  
SPBC15D4.14 |taf73||TATA-binding protein associated factor |Schi...    27   5.4  
SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ...    27   5.4  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   5.4  
SPAC630.09c |mug58||glycerate kinase |Schizosaccharomyces pombe|...    27   7.2  
SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr...    27   7.2  
SPCC162.01c |||RNA-binding protein |Schizosaccharomyces pombe|ch...    27   7.2  
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz...    26   9.5  

>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1337

 Score = 29.9 bits (64), Expect = 0.77
 Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
 Frame = +3

Query: 690 SEPEDQQHATRIYRRQIPSYRNKRRWDPNARRYPAGHG-ATLERERRD-RSPDA 845
           S  +  QH+T + + QIPS   K   DP+ RR P+    + L+R+ R  ++PDA
Sbjct: 139 SSSQSSQHSTHL-QFQIPSNEKKSLDDPSPRRKPSFFSKSNLKRKYRYLKNPDA 191


>SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 933

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 31/95 (32%), Positives = 41/95 (43%), Gaps = 5/95 (5%)
 Frame = +1

Query: 466 PEQPYPGVSILKPLTGVDPNLFSNLETFFLL-DYPTYELLFCVENEND----PAIMLVNS 630
           PE P+   +I K L   +P+  S  E      DY   +L+FC  N+ND          NS
Sbjct: 461 PEDPFKH-AIYKLLGNCEPHRVSLPEVCVTSEDYMWIQLMFCRVNQNDVIDSNGGQSTNS 519

Query: 631 LLQKYPQVEARLFVGGLNVGVNPKINNMQQGYIAA 735
           L   Y Q+E ++   G     NPK NN    Y  A
Sbjct: 520 LFNLY-QLEKKIVAFGPRY-FNPK-NNTPTNYFLA 551


>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = +1

Query: 562 YPTYELLFCVENENDPAIMLVNSLLQKYPQVEARLFVGGLNVGVNPKINNMQQ 720
           Y    ++   E  N  A  +  +LL   P V A LF+G  N   +  +N MQQ
Sbjct: 469 YQNQRVMIFTEFRNT-AEYITTTLLAIRPMVRASLFIGQANSAYSTGMNQMQQ 520


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
 Frame = +1

Query: 517  DPNLFSNLETFFLLDYPT-----YELLFCVENENDPAIMLVNSLLQKYPQVEARLFVGGL 681
            D N+F NL++  +LD  T     +E L C ENEN  +  L  S +  Y      L    L
Sbjct: 1086 DQNIFDNLQSIKMLDLTTCINGIFESL-CSENENTRSNAL--SCIDHYLNAHKMLLNTTL 1142

Query: 682  NVGVNPKINNM 714
            ++   P   N+
Sbjct: 1143 DISKLPSFQNL 1153


>SPBC15D4.14 |taf73||TATA-binding protein associated factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 13/52 (25%), Positives = 26/52 (50%)
 Frame = -2

Query: 822 VLFQVLHHVQQGIVSHSDPSVAYYDKRVFGGDISLLHVVDLRVHSDIQSADE 667
           VL+ +  H    ++  +DP +A Y    F  +  +LH  D+R  + ++ A +
Sbjct: 85  VLYPIFVHSYLDLLQKNDPEMAIYFFESFRIEHEVLHGYDIRALAQLKIASD 136


>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 797

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +1

Query: 739 YPLIVISDAGIRMRDDTLLDMVQHLKENVAIVHQMPFAYDA 861
           +P  ++S+A I+      LDM+    EN +I   +PFA D+
Sbjct: 646 FPKDLLSNAYIQQGFSKGLDMMNECLENKSITAPLPFAKDS 686


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 2/86 (2%)
 Frame = -1

Query: 703  SSGSLRHSVRRRTSELPLEDTSVGDCSLTL*PDRFRSQHKTKVRTSDSRVKRKSLDSRKG 524
            S+   R SV R  S+    +TS      +   +     ++    +S +R      DSRK 
Sbjct: 1274 SAAPARTSVSRSKSKAERHETSTSSRKSSKSGEHHHHHNEGHADSSSTRTSLAHQDSRK- 1332

Query: 523  SDLHR*AASRSTRPGK--AVRAATGP 452
              LHR  +  S+R  K  ++ + TGP
Sbjct: 1333 -SLHRHLSRSSSRASKKPSIVSTTGP 1357


>SPAC630.09c |mug58||glycerate kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 277

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = -2

Query: 885 LVNSSQSFGIIREGHLVNDRDVLFQVLHHVQQGIVSHSDP--SVAYYDKRVFGG 730
           L  ++ +  +++   L    DV F  L++V    V  SD   S+ +YDK  FGG
Sbjct: 74  LAKNNPNNPLVQHRGLAGTHDVTF--LNNVLNAFVKGSDEEVSIPFYDKSKFGG 125


>SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 1/96 (1%)
 Frame = +1

Query: 439 LHRTVDRSPPEQPYPGVSILKPLTG-VDPNLFSNLETFFLLDYPTYELLFCVENENDPAI 615
           +H+ + R+PP +P P +  ++  +  + P + S LE  F    P  E     E  +    
Sbjct: 260 IHQILLRTPPPKPLPRIRFIRSCSSPLAPPVLSKLEATFRA--PVLEAYAMTEASHQMTT 317

Query: 616 MLVNSLLQKYPQVEARLFVGGLNVGVNPKINNMQQG 723
             +  L+ K P    + F   L + ++ K N M QG
Sbjct: 318 NPLPPLVHK-PHSVGKPFGVELKI-LDQKGNEMPQG 351


>SPCC162.01c |||RNA-binding protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 244

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 5/62 (8%)
 Frame = +3

Query: 669 RRRTECRSEPEDQQHATRIYRRQIPSYRNKRRWDPNARR--YPAGHGATLERER---RDR 833
           R     RS  + +    R YRR     R+ RR++ + RR   PA      ER R   R+ 
Sbjct: 17  RNYESSRSRGDQRDRDYREYRRNYRDERSSRRYEDSQRRDYSPARRRDRYERHRESVREE 76

Query: 834 SP 839
           SP
Sbjct: 77  SP 78


>SPCC1795.08c |||histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 985

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 448 TVDRSPPEQPYPGVSILKPLTGVDPNLFS 534
           T+DR+  E P   +S+  PLT + P+ FS
Sbjct: 371 TIDRTGVEAPLFELSVSMPLTLIPPSKFS 399


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,093,073
Number of Sequences: 5004
Number of extensions: 80639
Number of successful extensions: 267
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 267
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 679334062
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)