Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_C16
         (1249 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    27   0.45 
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    24   3.2  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    22   9.7  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 26.6 bits (56), Expect = 0.45
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +3

Query: 456  PVAARTALPGRVDLEAAHRCRSEPFLESRDFLFTRLS 566
            P   R + P  V LEA H  R    + +R+FL T  S
Sbjct: 1105 PCVLRASTPAPVVLEAVHASRRVLIVLTRNFLLTEWS 1141


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -3

Query: 539 RFEKRFGSTPVSGFKIDTPG*GCSGGDRSTVL 444
           R E +FGS    GF++D      +GGD S+ +
Sbjct: 161 RCEMKFGSWTYDGFQLDLQLQDEAGGDISSFI 192


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 15/59 (25%), Positives = 25/59 (42%)
 Frame = +3

Query: 663 LVRRRTECRSEPEDQQHATRIYRRQIPSYRNKRRWDPNARRYPAGHGATLERERRDRSP 839
           L   + +   E   ++  +R   R+  SY+N+R++     R         ERE R R P
Sbjct: 22  LYNEKEKLLEERTSRKRYSRSREREQKSYKNERKYRKYRERSKERSRDRTERE-RSREP 79


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 284,652
Number of Sequences: 438
Number of extensions: 6361
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 42622365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)