Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_C14
         (1301 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    23   5.0  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    23   5.0  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   8.7  

>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 23.0 bits (47), Expect = 5.0
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = -1

Query: 65  NTNKFIMTPPGS 30
           NTN  IMTPP S
Sbjct: 457 NTNNAIMTPPAS 468


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 23.0 bits (47), Expect = 5.0
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = -1

Query: 65  NTNKFIMTPPGS 30
           NTN  IMTPP S
Sbjct: 405 NTNNAIMTPPAS 416


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 22.2 bits (45), Expect = 8.7
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +3

Query: 423 RGGGGGVXXGXXXPP 467
           +GGGGG   G   PP
Sbjct: 523 KGGGGGSGSGNNQPP 537


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.317    0.158    0.566 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,139
Number of Sequences: 336
Number of extensions: 3620
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 59
effective length of database: 102,761
effective search space used: 38432614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)