Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP26_F_C14
(1301 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 38 0.003
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 31 0.35
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 30 0.81
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 29 1.9
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc... 27 7.5
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 9.9
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 26 9.9
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 37.9 bits (84), Expect = 0.003
Identities = 20/42 (47%), Positives = 20/42 (47%)
Frame = -1
Query: 818 GGXGGXPGGFXGGXPGXXXXPXGXXPP*MGGGFFGXXXGGGG 693
GG GG PGGF GG G P G GGG G G GG
Sbjct: 224 GGFGGGPGGFEGGPGGFGGGPGG-----FGGGLGGFGGGPGG 260
Score = 29.1 bits (62), Expect = 1.4
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = -1
Query: 818 GGXGGXPGGFXGGXPGXXXXPXGXXPP 738
GG GG GGF GG G P G P
Sbjct: 245 GGFGGGLGGFGGGPGGFGGGPGGHGGP 271
Score = 27.9 bits (59), Expect = 3.3
Identities = 20/62 (32%), Positives = 20/62 (32%), Gaps = 1/62 (1%)
Frame = +1
Query: 424 GGGXGGFXPVXXXPPP-PGXGGXXXGXXXXXXXXXXXXXXLGGGXXVXPPPGGGXXXPPK 600
GGG GGF PPP PG G G GG PGG P
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGG 246
Query: 601 XG 606
G
Sbjct: 247 FG 248
Score = 27.5 bits (58), Expect = 4.3
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = -2
Query: 535 GAGGXGGGXXGGAXKXXPPXPGGGG 461
G G G G GG PP PGG G
Sbjct: 184 GHNGGGFGGFGGGSGGPPPGPGGFG 208
Score = 27.5 bits (58), Expect = 4.3
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = +1
Query: 1054 PGXXPXGXXGFXXPXXFFGXGPXXFXGGGG 1143
PG G GF FG GP F GG G
Sbjct: 237 PGGFGGGPGGFGGGLGGFGGGPGGFGGGPG 266
Score = 26.6 bits (56), Expect = 7.5
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = -1
Query: 731 GGGFFGXXXGGGGPXEXPPXXXLFG 657
GGGF G G GGP P FG
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFG 211
Score = 26.2 bits (55), Expect = 9.9
Identities = 22/66 (33%), Positives = 22/66 (33%), Gaps = 2/66 (3%)
Frame = -1
Query: 821 GGGXGGXPGGFXGGXPGXXXXP--XGXXPP*MGGGFFGXXXGGGGPXEXPPXXXLFGXXX 648
GGG GG GG G PG G G G GG G E P G
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGG 246
Query: 647 LWGXLG 630
G LG
Sbjct: 247 FGGGLG 252
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 31.1 bits (67), Expect = 0.35
Identities = 14/24 (58%), Positives = 14/24 (58%)
Frame = +3
Query: 462 PPPPGXGGXXFXAPPXXPPPXPPA 533
PPPPG G A P PPP PPA
Sbjct: 765 PPPPGVAG----AGPPPPPPPPPA 784
Score = 26.2 bits (55), Expect = 9.9
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = -1
Query: 497 PKXXPPXPGGGGXXXTGXNPPXPPP 423
P PP PG G G PP PPP
Sbjct: 761 PPPPPPPPGVAG---AGPPPPPPPP 782
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 29.9 bits (64), Expect = 0.81
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = -1
Query: 821 GGGXGGXPGGFXGGXPG 771
GG GG PGG GG PG
Sbjct: 612 GGAPGGAPGGMPGGAPG 628
Score = 29.1 bits (62), Expect = 1.4
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = -1
Query: 821 GGGXGGXPGGFXGGXPG 771
GG GG PGG GG PG
Sbjct: 616 GGAPGGMPGGAPGGAPG 632
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 28.7 bits (61), Expect = 1.9
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = +3
Query: 450 GXXXPPPPGXGGXXFXAPPXXPPPXPP 530
G PPPP G F P PPP PP
Sbjct: 7 GNPPPPPPPPG---FEPPSQPPPPPPP 30
>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 379
Score = 26.6 bits (56), Expect = 7.5
Identities = 18/46 (39%), Positives = 18/46 (39%), Gaps = 3/46 (6%)
Frame = -1
Query: 821 GGGXGGXPGGFXGGXPGXXXXPXGXXPP*MGGGF---FGXXXGGGG 693
GGG GG GG GG G GGG F GGGG
Sbjct: 136 GGGMGGGMGGM-GGMDDDMDMDGGFGTRTRGGGMPGGFANMFGGGG 180
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 309
Score = 26.2 bits (55), Expect = 9.9
Identities = 15/47 (31%), Positives = 15/47 (31%), Gaps = 6/47 (12%)
Frame = +1
Query: 1147 PPPXP------PXKKXPFXXXXPPXXXPXPXXKKXXXXPXXPXKKPP 1269
PPP P P K P PP P K P P PP
Sbjct: 150 PPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPP 196
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 26.2 bits (55), Expect = 9.9
Identities = 17/42 (40%), Positives = 17/42 (40%)
Frame = -1
Query: 818 GGXGGXPGGFXGGXPGXXXXPXGXXPP*MGGGFFGXXXGGGG 693
GG G GGF GG G G GGG G G GG
Sbjct: 12 GGSRGGRGGFNGGRGGFGGGRGGA----RGGGRGGARGGRGG 49
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.158 0.566
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,854,301
Number of Sequences: 5004
Number of extensions: 41311
Number of successful extensions: 166
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 711409724
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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