Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP26_F_C13
(1179 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|... 165 1e-41
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz... 165 1e-41
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi... 78 3e-15
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M... 78 3e-15
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch... 78 3e-15
SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro... 46 1e-05
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc... 32 0.13
>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 165 bits (401), Expect = 1e-41
Identities = 85/124 (68%), Positives = 90/124 (72%)
Frame = +1
Query: 76 MQIFVKTLXGXAHYIGGGSFRHXRKCQS*NPSPRKVFLQXQQRLIFAGKQLEXGRTLSDY 255
MQIFVKTL G + S +S ++ QQRLIFAGKQLE GRTLSDY
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKS-KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 59
Query: 256 NIQKESTLHLVLXLRGGTIEPSLRILAMKYNCEKMICRKCYARLHPRATNCRKTKCGHTN 435
NIQKESTLHLVL LRGG IEPSL+ LA KYNCEK ICRKCYARL PRATNCRK KCGHTN
Sbjct: 60 NIQKESTLHLVLRLRGGIIEPSLKALASKYNCEKQICRKCYARLPPRATNCRKKKCGHTN 119
Query: 436 NLRP 447
LRP
Sbjct: 120 QLRP 123
>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 165 bits (401), Expect = 1e-41
Identities = 85/124 (68%), Positives = 90/124 (72%)
Frame = +1
Query: 76 MQIFVKTLXGXAHYIGGGSFRHXRKCQS*NPSPRKVFLQXQQRLIFAGKQLEXGRTLSDY 255
MQIFVKTL G + S +S ++ QQRLIFAGKQLE GRTLSDY
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKS-KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 59
Query: 256 NIQKESTLHLVLXLRGGTIEPSLRILAMKYNCEKMICRKCYARLHPRATNCRKTKCGHTN 435
NIQKESTLHLVL LRGG IEPSL+ LA KYNCEK ICRKCYARL PRATNCRK KCGHTN
Sbjct: 60 NIQKESTLHLVLRLRGGIIEPSLKALASKYNCEKQICRKCYARLPPRATNCRKKKCGHTN 119
Query: 436 NLRP 447
LRP
Sbjct: 120 QLRP 123
>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 77.8 bits (183), Expect = 3e-15
Identities = 46/77 (59%), Positives = 50/77 (64%)
Frame = +1
Query: 76 MQIFVKTLXGXAHYIGGGSFRHXRKCQS*NPSPRKVFLQXQQRLIFAGKQLEXGRTLSDY 255
MQIFVKTL G + S +S ++ QQRLIFAGKQLE GRTLSDY
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKS-KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 59
Query: 256 NIQKESTLHLVLXLRGG 306
NIQKESTLHLVL LRGG
Sbjct: 60 NIQKESTLHLVLRLRGG 76
>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 382
Score = 77.8 bits (183), Expect = 3e-15
Identities = 46/77 (59%), Positives = 50/77 (64%)
Frame = +1
Query: 76 MQIFVKTLXGXAHYIGGGSFRHXRKCQS*NPSPRKVFLQXQQRLIFAGKQLEXGRTLSDY 255
MQIFVKTL G + S +S ++ QQRLIFAGKQLE GRTLSDY
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKS-KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 59
Query: 256 NIQKESTLHLVLXLRGG 306
NIQKESTLHLVL LRGG
Sbjct: 60 NIQKESTLHLVLRLRGG 76
Score = 77.8 bits (183), Expect = 3e-15
Identities = 46/77 (59%), Positives = 50/77 (64%)
Frame = +1
Query: 76 MQIFVKTLXGXAHYIGGGSFRHXRKCQS*NPSPRKVFLQXQQRLIFAGKQLEXGRTLSDY 255
MQIFVKTL G + S +S ++ QQRLIFAGKQLE GRTLSDY
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKS-KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 135
Query: 256 NIQKESTLHLVLXLRGG 306
NIQKESTLHLVL LRGG
Sbjct: 136 NIQKESTLHLVLRLRGG 152
Score = 77.8 bits (183), Expect = 3e-15
Identities = 46/77 (59%), Positives = 50/77 (64%)
Frame = +1
Query: 76 MQIFVKTLXGXAHYIGGGSFRHXRKCQS*NPSPRKVFLQXQQRLIFAGKQLEXGRTLSDY 255
MQIFVKTL G + S +S ++ QQRLIFAGKQLE GRTLSDY
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKS-KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 211
Query: 256 NIQKESTLHLVLXLRGG 306
NIQKESTLHLVL LRGG
Sbjct: 212 NIQKESTLHLVLRLRGG 228
Score = 77.8 bits (183), Expect = 3e-15
Identities = 46/77 (59%), Positives = 50/77 (64%)
Frame = +1
Query: 76 MQIFVKTLXGXAHYIGGGSFRHXRKCQS*NPSPRKVFLQXQQRLIFAGKQLEXGRTLSDY 255
MQIFVKTL G + S +S ++ QQRLIFAGKQLE GRTLSDY
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKS-KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 287
Query: 256 NIQKESTLHLVLXLRGG 306
NIQKESTLHLVL LRGG
Sbjct: 288 NIQKESTLHLVLRLRGG 304
Score = 77.8 bits (183), Expect = 3e-15
Identities = 46/77 (59%), Positives = 50/77 (64%)
Frame = +1
Query: 76 MQIFVKTLXGXAHYIGGGSFRHXRKCQS*NPSPRKVFLQXQQRLIFAGKQLEXGRTLSDY 255
MQIFVKTL G + S +S ++ QQRLIFAGKQLE GRTLSDY
Sbjct: 305 MQIFVKTLTGKTITLEVESSDTIDNVKS-KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 363
Query: 256 NIQKESTLHLVLXLRGG 306
NIQKESTLHLVL LRGG
Sbjct: 364 NIQKESTLHLVLRLRGG 380
>SPAC589.10c |||ribomal-ubiquitin fusion protein
Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 77.8 bits (183), Expect = 3e-15
Identities = 46/77 (59%), Positives = 50/77 (64%)
Frame = +1
Query: 76 MQIFVKTLXGXAHYIGGGSFRHXRKCQS*NPSPRKVFLQXQQRLIFAGKQLEXGRTLSDY 255
MQIFVKTL G + S +S ++ QQRLIFAGKQLE GRTLSDY
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKS-KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 59
Query: 256 NIQKESTLHLVLXLRGG 306
NIQKESTLHLVL LRGG
Sbjct: 60 NIQKESTLHLVLRLRGG 76
>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
protein modifier Ned8|Schizosaccharomyces pombe|chr
2|||Manual
Length = 78
Score = 45.6 bits (103), Expect = 1e-05
Identities = 20/38 (52%), Positives = 27/38 (71%)
Frame = +1
Query: 196 QQRLIFAGKQLEXGRTLSDYNIQKESTLHLVLXLRGGT 309
QQRLI+AGKQ+ + Y+++ S LHLVL LRGG+
Sbjct: 40 QQRLIYAGKQMADDKNAESYHLEGGSVLHLVLALRGGS 77
>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 32.3 bits (70), Expect = 0.13
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +1
Query: 196 QQRLIFAGKQLEXGRTLSDYNIQKESTLHLVLXL 297
+QRLI+AG+ L+ +L Y IQ ++HLV L
Sbjct: 43 RQRLIYAGRVLKDEESLKTYKIQDGHSIHLVKTL 76
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,281,098
Number of Sequences: 5004
Number of extensions: 54553
Number of successful extensions: 130
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 633513876
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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