Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_C13
         (1179 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    28   0.18 
AF487333-1|AAL93262.1|   80|Apis mellifera integrin betaPS protein.    27   0.32 
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           25   1.3  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    24   2.3  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    24   3.0  

>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 27.9 bits (59), Expect = 0.18
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -3

Query: 385 DGHSIYGKSFSHSYTSWRECEGKVQLYLL*XSKPGEVWIL 266
           DG+ +     + SY   + C+G   +Y +   K G +WIL
Sbjct: 98  DGNPLIAPYPNWSYNDVKYCDGLTSVYRMQVDKCGRLWIL 137


>AF487333-1|AAL93262.1|   80|Apis mellifera integrin betaPS protein.
          Length = 80

 Score = 27.1 bits (57), Expect = 0.32
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = -1

Query: 147 SXVSEASTSNVMGXPRKGFDEDLHCVAPMKNVSWKAK 37
           S V  AS S  +  P  GFD  +  +   + + W+ K
Sbjct: 44  SLVRNASVSGNLDAPEGGFDAIMQAIVCRRQIGWREK 80


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 25.0 bits (52), Expect = 1.3
 Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
 Frame = -1

Query: 471 YLILDLLFGSQIVSV----SALC--LATVGSTRMKTGIAFTANHFLTVILHGENAKGRFN 310
           +L+   LFG Q +++    +AL   +   G   + +G   +  ++ T+I   +   G  N
Sbjct: 7   WLLSICLFGLQEIAIQPGSNALSRNVEASGQRSVSSGFRSSLRNYKTLISSHDELPGHIN 66

Query: 309 CTSSKXQNQV 280
           C SSK +  +
Sbjct: 67  CDSSKFEEDL 76


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -3

Query: 349 SYTSWRECEGKVQLYLL*XSKPGEVWIL 266
           S+ ++++C G V  Y +   K   +WIL
Sbjct: 115 SWANYKDCSGIVSAYKIAIDKFDRLWIL 142


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 23.8 bits (49), Expect = 3.0
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = -3

Query: 349 SYTSWRECEGKVQLYLL*XSKPGEVWIL 266
           S+ ++++C G V  Y +   K   +W+L
Sbjct: 115 SWANYKDCSGIVSAYKIAIDKFDRLWVL 142


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 233,874
Number of Sequences: 438
Number of extensions: 4305
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 40126833
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)