Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_C12
         (1235 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro...    38   0.004
SPCC790.03 |||rhomboid family protease|Schizosaccharomyces pombe...    27   4.1  
SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy...    27   5.4  
SPAC3C7.07c |||arginine-tRNA protein transferase |Schizosaccharo...    26   9.4  

>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 397

 Score = 37.5 bits (83), Expect = 0.004
 Identities = 31/103 (30%), Positives = 43/103 (41%), Gaps = 9/103 (8%)
 Frame = +2

Query: 512 PKLPSMSVKASEGPTGSLE--PGARFDQNWSIVNTGTEQWPGCCRLIQAGGEPL--GATP 679
           PK+ +   K  E     LE  PG  F + W I NT  + WP    +   GG+ L  G  P
Sbjct: 270 PKVLNFDFKLVEDSILPLELSPGCPFYKIWHIRNTSCQSWPSPLYVKFNGGDKLFPGDNP 329

Query: 680 VYLPPLPVGH-----STTVTLKLVAPSTSGTHKSFFHLVTDKG 793
              P     H     + TV LK+   S      +FF++ +D G
Sbjct: 330 YSFPITSSVHPGEDVNFTVALKVPEKSNKEIFTAFFNICSDDG 372


>SPCC790.03 |||rhomboid family protease|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 248

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 14/54 (25%), Positives = 26/54 (48%)
 Frame = +3

Query: 540 HLKVQLVVWNLVHVLIKIGVLSTREQNNGQVVVD*YKLVVNPLALHLFIYHPFL 701
           HL +  +V+N V +L  +     ++     ++V      + P  +HL +YH FL
Sbjct: 63  HLSMLHIVFNFVSLLPAMSQFEKKQGTLACILVTVIPYTLFPGIMHLIVYHFFL 116


>SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -2

Query: 103 QQTATXGRQRXXXNQPEGSASLXXKAPXXEA 11
           QQT   G Q     +P  SAS+  +AP  EA
Sbjct: 305 QQTTQQGTQNSANAEPSSSASVPAEAPETEA 335


>SPAC3C7.07c |||arginine-tRNA protein transferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 361

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 17/57 (29%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
 Frame = +2

Query: 494 YLXYTSPKLPSMSVKASEGPTGSLEPGARFDQNWSIVNTGTEQW-PGCCRLIQAGGE 661
           Y+ Y     P M  KA+  P+  L PG      W  +   T  W  G  + I  G E
Sbjct: 215 YMGYYIHTCPKMKYKATYSPSYLLNPGT---NKWIPIENFTSLWNTGAPKYISFGDE 268


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,384,952
Number of Sequences: 5004
Number of extensions: 57622
Number of successful extensions: 121
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 671365334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)