Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_C12
         (1235 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0448 - 23001579-23001683,23001783-23002382,23002479-230026...    54   2e-07
04_04_0239 - 23843235-23843243,23843334-23844047,23844138-238442...    49   9e-06
06_01_0778 + 5816588-5816885,5817554-5817615,5818764-5818905,581...    31   1.4  
11_01_0150 + 1256029-1256137,1256206-1256247,1256345-1256455,125...    29   10.0 

>02_04_0448 -
           23001579-23001683,23001783-23002382,23002479-23002628,
           23002788-23003015,23003188-23003302,23003392-23004659,
           23006621-23006692
          Length = 845

 Score = 54.0 bits (124), Expect = 2e-07
 Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 5/96 (5%)
 Frame = +2

Query: 563 LEPGARFDQNWSIVNTGTEQWPGCCRLIQAGGEPLGA---TPVYLPP--LPVGHSTTVTL 727
           + P   F + W + N G+  WP   +LI  GG+        P+ +P    PV     V +
Sbjct: 518 MAPSTPFTKIWRMHNNGSIMWPLGTQLIWVGGDQFALQTYVPLEIPVDGFPVDQEIDVAV 577

Query: 728 KLVAPSTSGTHKSFFHLVTDKGEQIGDTLWVEVTVE 835
             VAP+  G + S++ L +  G++ G  +WV + VE
Sbjct: 578 DFVAPARPGRYISYWRLASPSGQKFGQRVWVHIQVE 613


>04_04_0239 -
           23843235-23843243,23843334-23844047,23844138-23844287,
           23844389-23844601,23844697-23844811,23844919-23846300,
           23847217-23847279
          Length = 881

 Score = 48.8 bits (111), Expect = 9e-06
 Identities = 31/116 (26%), Positives = 51/116 (43%), Gaps = 7/116 (6%)
 Frame = +2

Query: 551 PTGS-LEPGARFDQNWSIVNTGTEQWP-GCCRLIQAGGEPLGATP-----VYLPPLPVGH 709
           P G+ + P   F + W I N G+  WP G C L   GG            + +   P+  
Sbjct: 543 PDGTVMAPSTPFTKIWRIHNNGSSMWPYGTC-LTWVGGHLFARNSSVKLGISVDGFPIDQ 601

Query: 710 STTVTLKLVAPSTSGTHKSFFHLVTDKGEQIGDTLWVEVTVESEMTMALVEQLAAL 877
              V +  V P+  G + S++ L +  G+  G  +WV + VE  +  +  +Q AA+
Sbjct: 602 EIDVGVDFVTPAKPGGYVSYWRLASPTGQMFGQRVWVFIQVEHPVKTSSNKQSAAI 657


>06_01_0778 +
           5816588-5816885,5817554-5817615,5818764-5818905,
           5819969-5820064,5820147-5820266,5820401-5820663,
           5821507-5821617
          Length = 363

 Score = 31.5 bits (68), Expect = 1.4
 Identities = 23/70 (32%), Positives = 29/70 (41%)
 Frame = +2

Query: 506 TSPKLPSMSVKASEGPTGSLEPGARFDQNWSIVNTGTEQWPGCCRLIQAGGEPLGATPVY 685
           T+PK    S      P   L  G    +NW  V+ G ++    CR   A      A PV 
Sbjct: 8   TTPKSGGESGAPRRRPPPQLGSGRA--KNWRPVSAGHQEPTSACRQELAAAAAAAALPV- 64

Query: 686 LPPLPVGHST 715
            PP+P G ST
Sbjct: 65  -PPVPRGSST 73


>11_01_0150 +
           1256029-1256137,1256206-1256247,1256345-1256455,
           1256538-1256600,1256678-1256910,1256999-1257223,
           1257319-1257411,1257493-1257591,1257840-1257956
          Length = 363

 Score = 28.7 bits (61), Expect = 10.0
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +3

Query: 870 QHFQSLAVDWKNXLHRHNHKTIKCVERLWK 959
           +H +SL ++W+  LHRH  K  K +++  K
Sbjct: 207 EHAKSLWINWRGDLHRHFVKPAKTMQQAIK 236


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,930,494
Number of Sequences: 37544
Number of extensions: 380611
Number of successful extensions: 857
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 856
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3806166204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)