Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_C12
         (1235 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024089-4|AAK09073.2|  239|Caenorhabditis elegans Hypothetical ...    62   6e-10
Z83236-11|CAB05785.1|  489|Caenorhabditis elegans Hypothetical p...    32   0.96 
Z81468-3|CAB03876.1|  489|Caenorhabditis elegans Hypothetical pr...    32   0.96 
U32223-1|AAA74956.1|  489|Caenorhabditis elegans tRNA-guanine tr...    32   0.96 
U88166-3|AAO44910.1|  160|Caenorhabditis elegans Collagen protei...    29   6.8  

>AC024089-4|AAK09073.2|  239|Caenorhabditis elegans Hypothetical
           protein C36E6.2 protein.
          Length = 239

 Score = 62.5 bits (145), Expect = 6e-10
 Identities = 49/201 (24%), Positives = 86/201 (42%), Gaps = 16/201 (7%)
 Frame = +2

Query: 329 AIXQNLLLQFSCMHXTASXALIKQMQXLLGPXL-NYNTASFFLXMXNWNLQAAICCYLXY 505
           A+  +L+ + S M       LI + + ++ P +  ++ A+F+L + NWNL  AI  +   
Sbjct: 3   ALENSLISKMSQMTTDDRENLIHKFEEIISPQMIPHDLAAFYLDLANWNLSTAISVFYDQ 62

Query: 506 TSPKLP----------SMSVKAS---EGPTGSL--EPGARFDQNWSIVNTGTEQWPGCCR 640
               L           S +VK     E  +GS    P + F   W +VN G  +WP   R
Sbjct: 63  NGDLLHMEEAFRQTCLSSTVKECTNREAISGSFTYRPNSTFFCGWRVVNDGRFRWPDGTR 122

Query: 641 LIQAGGEPLGATPVYLPPLPVGHSTTVTLKLVAPSTSGTHKSFFHLVTDKGEQIGDTLWV 820
           L    G+P+         L    S  + +++  P+  G  K+ F  VT +    G+++WV
Sbjct: 123 LAFVDGDPIDYEVWKDTVLDPDQSENIEIRISCPAEMGDFKARFQFVTPQNFFFGESIWV 182

Query: 821 EVTVESEMTMALVEQLAALPV 883
            + V          +++A P+
Sbjct: 183 IIRVRPLTEAEAAMEVSAQPM 203


>Z83236-11|CAB05785.1|  489|Caenorhabditis elegans Hypothetical
           protein C13B4.2 protein.
          Length = 489

 Score = 31.9 bits (69), Expect = 0.96
 Identities = 12/50 (24%), Positives = 26/50 (52%)
 Frame = +2

Query: 791 GEQIGDTLWVEVTVESEMTMALVEQLAALPVPSSRLEEXLTQTQSQDDQM 940
           G  +GD  W  +T++  MT+ ++  +  +P P + LE+       Q +++
Sbjct: 47  GRTLGDDDWEGITIKENMTIMMMGSVGEIPKPPTVLEKKQANRDKQAEEI 96


>Z81468-3|CAB03876.1|  489|Caenorhabditis elegans Hypothetical
           protein C13B4.2 protein.
          Length = 489

 Score = 31.9 bits (69), Expect = 0.96
 Identities = 12/50 (24%), Positives = 26/50 (52%)
 Frame = +2

Query: 791 GEQIGDTLWVEVTVESEMTMALVEQLAALPVPSSRLEEXLTQTQSQDDQM 940
           G  +GD  W  +T++  MT+ ++  +  +P P + LE+       Q +++
Sbjct: 47  GRTLGDDDWEGITIKENMTIMMMGSVGEIPKPPTVLEKKQANRDKQAEEI 96


>U32223-1|AAA74956.1|  489|Caenorhabditis elegans tRNA-guanine
           transglycosylase protein.
          Length = 489

 Score = 31.9 bits (69), Expect = 0.96
 Identities = 12/50 (24%), Positives = 26/50 (52%)
 Frame = +2

Query: 791 GEQIGDTLWVEVTVESEMTMALVEQLAALPVPSSRLEEXLTQTQSQDDQM 940
           G  +GD  W  +T++  MT+ ++  +  +P P + LE+       Q +++
Sbjct: 47  GRTLGDDDWEGITIKENMTIMMMGSVGEIPKPPTVLEKKQANRDKQAEEI 96


>U88166-3|AAO44910.1|  160|Caenorhabditis elegans Collagen protein
           53 protein.
          Length = 160

 Score = 29.1 bits (62), Expect = 6.8
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -3

Query: 723 VTVVECPTGRGGK*TGVAPRGS 658
           V + ECPTGR G+  G  P+GS
Sbjct: 2   VCIRECPTGRPGREGGDGPKGS 23


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,052,767
Number of Sequences: 27780
Number of extensions: 351927
Number of successful extensions: 801
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 800
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3422502224
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)