Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_C11
         (1183 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.14 |||mitochondrial ribosomal protein subunit S26|Schiz...    27   6.7  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    27   6.7  
SPCC1183.06 |ung1||uracil DNA N-glycosylase Ung1|Schizosaccharom...    27   6.7  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    26   8.9  
SPAC17C9.02c |lys7||alpha-aminoadipate reductase phosphopantethe...    26   8.9  

>SPBC16A3.14 |||mitochondrial ribosomal protein subunit
           S26|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 277

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +2

Query: 866 YKVNYLTNN*IVPALSKNSIVPLSNP 943
           ++VNY  N   VP LS+ +++PL +P
Sbjct: 30  HRVNYCYNYHTVPNLSQRNLLPLFSP 55


>SPAC18G6.05c |||translation elongation regulator Gcn1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
 Frame = +3

Query: 183  RGIMLNAVEYCVFPGAVN-----AEAKRRVLDEVARSESKHFLVLFRDAGCQFRALYSYC 347
            R  MLNA+   V     N     AEA  ++LDE++   S+H ++  +  G    AL+S+ 
Sbjct: 2381 RKAMLNALFAVVSKSGQNMNEASAEAIEQLLDEISAESSEHMVICAKLYG----ALFSHL 2436

Query: 348  PE 353
            P+
Sbjct: 2437 PD 2438


>SPCC1183.06 |ung1||uracil DNA N-glycosylase
           Ung1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 322

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 479 SHHRRLHDTQLAVAGQEGAATQQEGHGL 562
           SHH  LH T++ + GQ+      + HGL
Sbjct: 126 SHHTPLHKTKVILLGQDPYHNIGQAHGL 153


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +1

Query: 910  IEKLYCXIK*PDSLQRLGE*GQVSLGNFYDYSLINYILMHYN 1035
            ++++Y  I  PD ++       VSL NF+DYS    +L+H N
Sbjct: 1425 LQEIYAGIDDPDEIEA------VSL-NFHDYSFDQQLLLHEN 1459


>SPAC17C9.02c |lys7||alpha-aminoadipate reductase
           phosphopantetheinyl transferase Lys7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = -1

Query: 529 FLPCHSELCIVKASMVTVRCFVWTCEKHLLPELYLKNLSNILSL 398
           F PC  +L     S + V   +WTC++ +L  L +    N L +
Sbjct: 147 FTPCEWKLIKSSISSIDVFFLLWTCKEAILKALGIGLSGNPLDI 190


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,173,166
Number of Sequences: 5004
Number of extensions: 52112
Number of successful extensions: 126
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 635506058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)