Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP26_F_C10
(1244 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 421 e-118
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 138 1e-33
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 128 1e-30
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 124 3e-29
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 123 4e-29
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo... 121 2e-28
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 121 2e-28
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb... 120 4e-28
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 116 5e-27
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ... 112 1e-25
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 110 4e-25
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 108 2e-24
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po... 105 1e-23
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 100 8e-22
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 98 2e-21
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p... 91 3e-19
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 91 3e-19
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po... 88 2e-18
SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1 |Schiz... 83 1e-16
SPAC1834.11c |sec18||secretory pathway protein Sec18 |Schizosacc... 76 9e-15
SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces po... 38 0.003
SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|c... 36 0.012
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 32 0.19
SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces pombe... 32 0.19
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc... 31 0.25
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce... 31 0.33
SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa... 30 0.77
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ... 29 1.0
SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein S15a... 29 1.8
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S... 29 1.8
SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein S... 29 1.8
SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr 1|||Ma... 29 1.8
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex... 29 1.8
SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr 3... 28 2.3
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 28 3.1
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac... 28 3.1
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 27 7.2
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha... 27 7.2
SPAC23D3.02 |rfc2||DNA replication factor C complex subunit Rfc2... 27 7.2
SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomy... 26 9.5
SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces pomb... 26 9.5
SPAC139.05 |||succinate-semialdehyde dehydrogenase |Schizosaccha... 26 9.5
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 26 9.5
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 421 bits (1037), Expect = e-118
Identities = 195/292 (66%), Positives = 237/292 (81%)
Frame = +2
Query: 179 RKDXPNRLIVEAAVSDXNSVVALSQAKMEQLQLFRGDTVLLKGKRRKETVCIVLSDDNCP 358
+K PN L+V+ A +D NSV+ LS ME LQLFRGDTV++KGKRRK+TV IVL+D+
Sbjct: 39 KKRKPNSLVVDDATNDDNSVITLSSNTMETLQLFRGDTVVVKGKRRKDTVLIVLTDEEME 98
Query: 359 DEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPIDDSVEGLTGNLFEVYLKPY 538
D R+ D+V+I PCP +KY +R+ +LP+ D+VEGLTG+LF+VYLKPY
Sbjct: 99 DGVARINRVVRNNLRVRLGDIVTINPCPDIKYAERISVLPLADTVEGLTGSLFDVYLKPY 158
Query: 539 FMEAYRPIHRDDTFMVRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKREEEEEAL 718
F+EAYRPI + D F+VRG MR VEFKVV+ P F IV+ DT+IH +GEPI RE+EE +L
Sbjct: 159 FVEAYRPIRKGDLFVVRGSMRQVEFKVVDVAPDEFGIVSQDTIIHWEGEPINREDEESSL 218
Query: 719 NAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAV 898
VGYDDIGGCR+Q+AQI+E+VELPLRHP LFK+IG+KPPRGILMYGPPGTGKTL+ARAV
Sbjct: 219 AEVGYDDIGGCRRQMAQIRELVELPLRHPQLFKSIGIKPPRGILMYGPPGTGKTLMARAV 278
Query: 899 ANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADXNSPAIIFXDELDAMA 1054
ANETGAFFFLINGPEIMSK+AGESESNLRKAFEEA+ NSPAIIF DE+D++A
Sbjct: 279 ANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAIIFIDEIDSIA 330
Score = 118 bits (283), Expect = 2e-27
Identities = 54/121 (44%), Positives = 82/121 (67%)
Frame = +2
Query: 695 REEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTG 874
RE E N V ++DIGG + +++E V++P+ + F GV P +G+L +GPPGTG
Sbjct: 485 RETVVEVPN-VRWEDIGGLEEVKRELRETVQMPVMYAEKFLRFGVTPSKGVLFFGPPGTG 543
Query: 875 KTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADXNSPAIIFXDELDAMA 1054
KTL+A+A+ANE A F + GPE++S GESESN+R F++A +P ++F DELD++A
Sbjct: 544 KTLLAKAIANECSANFISVKGPELLSMWFGESESNVRDIFDKARAAAPCVVFLDELDSIA 603
Query: 1055 Q 1057
+
Sbjct: 604 K 604
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 138 bits (335), Expect = 1e-33
Identities = 61/112 (54%), Positives = 84/112 (75%)
Frame = +2
Query: 719 NAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAV 898
+AV + IGG + Q+AQI+++VELP ++P LFK + PPRG+L+YGPPGTGKT++ RAV
Sbjct: 274 SAVTFSSIGGLQAQIAQIRDIVELPFQNPELFKFFNIMPPRGVLLYGPPGTGKTMVMRAV 333
Query: 899 ANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADXNSPAIIFXDELDAMA 1054
A E A F I+GP ++ K GE+ES LRK FE+A + P+IIF DE+DA+A
Sbjct: 334 AAEANAQVFTIDGPSVVGKYLGETESRLRKIFEDARAHQPSIIFIDEIDALA 385
Score = 120 bits (290), Expect = 3e-28
Identities = 56/119 (47%), Positives = 79/119 (66%)
Frame = +2
Query: 695 REEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTG 874
RE E+ N V + DIGG + ++KE VE PL H F +GV+PP+G+L+YGPPG
Sbjct: 536 REFMMESPN-VHWSDIGGQEEVKQKLKESVEWPLTHGETFSRLGVRPPKGVLLYGPPGCS 594
Query: 875 KTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADXNSPAIIFXDELDAM 1051
KT+ A+A+A ETG F + GPE+ K GESE +R+ F++A SP++IF DE+DA+
Sbjct: 595 KTITAKAIATETGLNFIAVKGPELFDKFVGESERAVRQVFQKARQASPSVIFFDEIDAL 653
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 128 bits (310), Expect = 1e-30
Identities = 56/125 (44%), Positives = 85/125 (68%)
Frame = +2
Query: 677 DGEPIKREEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMY 856
D +P+ + + Y DIGG Q+ +IKE VELPL HP L++ +G+KPP+G+++Y
Sbjct: 172 DTDPMINVMKLDKAPTESYADIGGLESQIQEIKEAVELPLTHPELYEEMGIKPPKGVILY 231
Query: 857 GPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADXNSPAIIFXD 1036
G PGTGKTL+A+AVAN+T A F + G E++ K G+ +R+ F A+ +SP+I+F D
Sbjct: 232 GAPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPRLVRQLFNAAEEHSPSIVFID 291
Query: 1037 ELDAM 1051
E+DA+
Sbjct: 292 EIDAI 296
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 124 bits (299), Expect = 3e-29
Identities = 52/107 (48%), Positives = 80/107 (74%)
Frame = +2
Query: 731 YDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVANET 910
Y+ +GG KQ+ +IKE++ELP++HP LF+++G+ P+GIL+YGPPGTGKTL+ARAVA+ T
Sbjct: 144 YEMVGGLEKQIKEIKEVIELPVKHPELFESLGIPQPKGILLYGPPGTGKTLLARAVAHHT 203
Query: 911 GAFFFLINGPEIMSKLAGESESNLRKAFEEADXNSPAIIFXDELDAM 1051
F ++G E++ K GE +R+ F A ++P+IIF DE+D++
Sbjct: 204 DCKFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSI 250
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 123 bits (297), Expect = 4e-29
Identities = 55/109 (50%), Positives = 75/109 (68%)
Frame = +2
Query: 725 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVAN 904
V Y D+GGC++Q+ +++E+VELPL P F +G+ PP+GI++YGPPGTGKTL ARAVAN
Sbjct: 176 VTYGDVGGCKEQIERLREVVELPLLSPERFVKLGIDPPKGIMLYGPPGTGKTLCARAVAN 235
Query: 905 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEADXNSPAIIFXDELDAM 1051
T A F + G E++ K GE +R+ FE A IIF DE+DA+
Sbjct: 236 RTDATFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAI 284
>SPCC576.10c |rpt3||19S proteasome regulatory subunit
Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 389
Score = 121 bits (291), Expect = 2e-28
Identities = 55/110 (50%), Positives = 73/110 (66%)
Frame = +2
Query: 725 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVAN 904
V Y D+GG Q +++E VELPL L++ IG+ PPRG+L+YGPPGTGKT++ +AVAN
Sbjct: 131 VSYADVGGLDVQKQEVREAVELPLTQGDLYRQIGIDPPRGVLLYGPPGTGKTMLVKAVAN 190
Query: 905 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEADXNSPAIIFXDELDAMA 1054
T A F + G E + K GE +R F A N+PAIIF DE+DA+A
Sbjct: 191 STAANFIRVVGSEFVQKYLGEGPRMVRDVFRMARENAPAIIFIDEIDAIA 240
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 121 bits (291), Expect = 2e-28
Identities = 55/110 (50%), Positives = 78/110 (70%)
Frame = +2
Query: 725 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVAN 904
V +DDIGG + +++ ++LPL+ P LF G+KP G+L+YGPPGTGKTL+A+AVA
Sbjct: 652 VNWDDIGGLEEAKTVLRDTLQLPLQFPELFSQ-GLKPRSGVLLYGPPGTGKTLLAKAVAT 710
Query: 905 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEADXNSPAIIFXDELDAMA 1054
E F I GPE+++ GESE+N+R FE+A +SP +IF DELD++A
Sbjct: 711 ELSLEFVSIKGPELLNMYVGESEANVRNVFEKARNSSPCVIFFDELDSIA 760
Score = 34.7 bits (76), Expect = 0.027
Identities = 22/69 (31%), Positives = 32/69 (46%)
Frame = +2
Query: 848 LMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADXNSPAII 1027
L++G P TGKT VA+ A F I+ E A E+ L + + AII
Sbjct: 426 LLHGNPFTGKTKAVEEVASLFSAPVFTISSYEFADATADHLEAKLDMFVQNVVKSPCAII 485
Query: 1028 FXDELDAMA 1054
F +LD ++
Sbjct: 486 FVKDLDVLS 494
>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 779
Score = 120 bits (289), Expect = 4e-28
Identities = 51/120 (42%), Positives = 81/120 (67%)
Frame = +2
Query: 692 KREEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGT 871
K E E + + DIGG + ++ E+V +P++HP +++ G+ PPRG+L++GPPG
Sbjct: 160 KAEANREPPSDISLSDIGGLDDCINELLELVAMPIKHPEVYQYTGIHPPRGVLLHGPPGC 219
Query: 872 GKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADXNSPAIIFXDELDAM 1051
GKT++A A+ANE G F I+ P I+S ++GESE +R+ FEEA +P ++F DE+DA+
Sbjct: 220 GKTMLANALANELGVPFISISAPSIVSGMSGESEKKVREVFEEAKSLAPCLMFIDEIDAV 279
Score = 115 bits (276), Expect = 2e-26
Identities = 50/123 (40%), Positives = 81/123 (65%)
Frame = +2
Query: 683 EPIKREEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGP 862
+P + E + V +++IG + +++ + P++ P L++++G+ P G+L++GP
Sbjct: 475 QPSSKREGFATVPGVSWNNIGALKSIRVELQMAIVQPIKRPELYQSVGISAPTGVLLWGP 534
Query: 863 PGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADXNSPAIIFXDEL 1042
PG GKTL+A+AVANE+ A F I GPE+++K GESE +R+ F A +SP +IF DEL
Sbjct: 535 PGCGKTLLAKAVANESKANFISIRGPELLNKYVGESERAVRQVFLRARASSPCVIFFDEL 594
Query: 1043 DAM 1051
DAM
Sbjct: 595 DAM 597
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 116 bits (280), Expect = 5e-27
Identities = 49/109 (44%), Positives = 75/109 (68%)
Frame = +2
Query: 725 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVAN 904
+ + +GG +Q+ +++E++ELPL++P LF +G+KPP+G+L+YGPPGTGKTL+ARAVA
Sbjct: 129 ISFAGVGGLNEQIRELREVIELPLKNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAVAA 188
Query: 905 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEADXNSPAIIFXDELDAM 1051
G F + I+ K GES +R+ F A + P +IF DE+DA+
Sbjct: 189 SLGVNFLKVVSSAIVDKYIGESARIIREMFGYAKEHEPCVIFMDEIDAI 237
>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 112 bits (269), Expect = 1e-25
Identities = 51/107 (47%), Positives = 71/107 (66%)
Frame = +2
Query: 731 YDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVANET 910
Y DIGG KQ+ ++ E + LP++ F+ +GVKPP+G LM+GPPGTGKTL+ARA A ++
Sbjct: 184 YSDIGGLSKQIEELFEAIVLPMQQADKFRKLGVKPPKGCLMFGPPGTGKTLLARACAAQS 243
Query: 911 GAFFFLINGPEIMSKLAGESESNLRKAFEEADXNSPAIIFXDELDAM 1051
A F + P+++ G+ +R AF A SPAIIF DELDA+
Sbjct: 244 NATFLKLAAPQLVQMFIGDGAKLVRDAFALAKEKSPAIIFIDELDAI 290
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 110 bits (264), Expect = 4e-25
Identities = 51/117 (43%), Positives = 76/117 (64%), Gaps = 5/117 (4%)
Frame = +2
Query: 719 NAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAV 898
+++ ++ +GG + Q+KEMV LPL +P +F+ ++PPRG+L +GPPGTGKTL+ARA+
Sbjct: 261 SSLSFESVGGLDNYINQLKEMVMLPLLYPEIFQRFNMQPPRGVLFHGPPGTGKTLMARAL 320
Query: 899 A-----NETGAFFFLINGPEIMSKLAGESESNLRKAFEEADXNSPAIIFXDELDAMA 1054
A F++ G + +SK GE+E LR FEEA P+IIF DE+D +A
Sbjct: 321 AAACSSENKKVSFYMRKGADCLSKWVGEAERQLRLLFEEAKSTQPSIIFFDEIDGLA 377
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 108 bits (259), Expect = 2e-24
Identities = 56/133 (42%), Positives = 78/133 (58%), Gaps = 5/133 (3%)
Frame = +2
Query: 671 HCDGEPIKREEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGIL 850
H D + I+ + + ++ IGG + Q+KEMV LPL +P +F + + PPRG+L
Sbjct: 351 HIDEKTIRSTDPFANRENLDFNSIGGLEDIILQLKEMVMLPLLYPEVFLHLHITPPRGVL 410
Query: 851 MYGPPGTGKTLIARAVANETGA-----FFFLINGPEIMSKLAGESESNLRKAFEEADXNS 1015
+GPPGTGKTL+AR +A FFL G + +SK GE+E LR FEEA
Sbjct: 411 FHGPPGTGKTLMARVLAANCSTKNQKISFFLRKGSDCLSKWVGEAERQLRLLFEEARRVQ 470
Query: 1016 PAIIFXDELDAMA 1054
P+IIF DE+D +A
Sbjct: 471 PSIIFFDEIDGLA 483
Score = 26.2 bits (55), Expect = 9.5
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +2
Query: 941 EIMSKLAGESESNLRKAFEEADXNSPAIIFXDELD 1045
E++ S L K F EA N+P+IIF + ++
Sbjct: 742 ELLMDTTTSPRSLLTKIFSEARKNAPSIIFINNVE 776
>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 105 bits (253), Expect = 1e-23
Identities = 53/109 (48%), Positives = 72/109 (66%)
Frame = +2
Query: 725 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVAN 904
V +DDI G +KE V LP++ P LF G KP GIL+YGPPGTGK+ +A+AVA
Sbjct: 126 VRWDDIAGLENAKEALKETVLLPIKLPQLFSH-GRKPWSGILLYGPPGTGKSYLAKAVAT 184
Query: 905 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEADXNSPAIIFXDELDAM 1051
E G+ FF I+ +++SK GESE +R+ FE A P+IIF DE+D++
Sbjct: 185 EAGSTFFSISSSDLVSKWMGESERLVRQLFEMAREQKPSIIFIDEIDSL 233
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 99.5 bits (237), Expect = 8e-22
Identities = 50/109 (45%), Positives = 69/109 (63%)
Frame = +2
Query: 725 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVAN 904
V +DDI G +KE V P P LF+ + +P RG+L++GPPGTGKT++ARAVA
Sbjct: 456 VHWDDISGLEFAKHSLKEAVVYPFLRPDLFQGLR-EPARGMLLFGPPGTGKTMLARAVAT 514
Query: 905 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEADXNSPAIIFXDELDAM 1051
E+ + FF I+ + SK GESE +R F A SP+IIF DE+D++
Sbjct: 515 ESRSVFFSISASSLTSKFLGESEKLVRALFTLAKKLSPSIIFVDEIDSL 563
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 98.3 bits (234), Expect = 2e-21
Identities = 50/118 (42%), Positives = 73/118 (61%)
Frame = +2
Query: 704 EEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTL 883
EE A+N V + D+ G + +++E+V+ LR P+ F +G K PRG+L+ GPPGTGKT+
Sbjct: 258 EERAIN-VRFSDVQGVDEAKEELEEIVDF-LRDPTHFTRLGGKLPRGVLLTGPPGTGKTM 315
Query: 884 IARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADXNSPAIIFXDELDAMAQ 1057
+ARAVA E FF ++G + G +R+ F A +P+IIF DELDA+ Q
Sbjct: 316 LARAVAGEANVPFFFMSGSQFDEMYVGVGAKRVRELFAAARKQAPSIIFIDELDAIGQ 373
>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 91.1 bits (216), Expect = 3e-19
Identities = 42/111 (37%), Positives = 65/111 (58%)
Frame = +2
Query: 725 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVAN 904
+ + D+ G + +I E V+ L++P ++ +G K PRG ++ GPPGTGKTL+A+A A
Sbjct: 293 IKFADVAGVDEAKEEIMEFVKF-LKNPKFYERLGAKIPRGAILSGPPGTGKTLLAKATAG 351
Query: 905 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEADXNSPAIIFXDELDAMAQ 1057
E F ++G E + G S +R F A N+P IIF DE+DA+ +
Sbjct: 352 EANVPFLSVSGSEFLEMFVGVGPSRVRDLFATARKNAPCIIFIDEIDAIGK 402
>SPBC947.01 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 91.1 bits (216), Expect = 3e-19
Identities = 46/109 (42%), Positives = 67/109 (61%)
Frame = +2
Query: 725 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVAN 904
V + DI G +KE V P P LF+ + +P +G+L++GPPGTGKT++ARAVA
Sbjct: 376 VYWSDIAGLDDAKNSLKEAVIYPFLRPELFQGLR-EPVQGMLLFGPPGTGKTMLARAVAT 434
Query: 905 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEADXNSPAIIFXDELDAM 1051
E A FF I+ + SK G+SE +R FE A + ++IF DE+D++
Sbjct: 435 EAKATFFSISASSLTSKYLGDSEKLVRALFEVAKRQTCSVIFVDEIDSI 483
>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 937
Score = 88.2 bits (209), Expect = 2e-18
Identities = 38/126 (30%), Positives = 74/126 (58%)
Frame = +2
Query: 677 DGEPIKREEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMY 856
D P++ + + +++ + DI G ++ +++++E P+++ ++K ++ P GIL++
Sbjct: 587 DFVPLQLRKAKFVKSSIRWIDIAGMQEAKEAVRDIIESPVKYSLIYKQCRLRLPTGILLF 646
Query: 857 GPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADXNSPAIIFXD 1036
G PG GKT +A A+++ F I GPE++ K G+SE +R F A P ++F D
Sbjct: 647 GYPGCGKTYLASAISSTFPVQFISIKGPELLDKYIGKSEQGVRDLFSRAQMAKPCVLFFD 706
Query: 1037 ELDAMA 1054
E D++A
Sbjct: 707 EFDSVA 712
>SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 355
Score = 82.6 bits (195), Expect = 1e-16
Identities = 42/109 (38%), Positives = 65/109 (59%), Gaps = 2/109 (1%)
Frame = +2
Query: 725 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIG--VKPPRGILMYGPPGTGKTLIARAV 898
V +DDIGG + + Q+ + V PL++P +F G + P+G+L+YGPPG GKT++A+A+
Sbjct: 86 VSFDDIGGMDEHVNQLLQDVLFPLKYPEVFDTHGGLLSCPKGLLLYGPPGCGKTMLAKAL 145
Query: 899 ANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADXNSPAIIFXDELD 1045
A ++ A F ++ + K GES + F A P IIF DE+D
Sbjct: 146 AKQSQATFINVSVGLLTDKWFGESNKLVDALFTLARKLEPTIIFIDEID 194
>SPAC1834.11c |sec18||secretory pathway protein Sec18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 792
Score = 76.2 bits (179), Expect = 9e-15
Identities = 45/116 (38%), Positives = 66/116 (56%), Gaps = 10/116 (8%)
Frame = +2
Query: 740 IGGCRKQLAQI-KEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVANETGA 916
IGG + + I + L P + + +G+ +GIL+YGPPGTGKTLIAR + A
Sbjct: 271 IGGLDSEFSAIFRRAFASRLFPPGMVEKLGINHVKGILLYGPPGTGKTLIARQIGKMLNA 330
Query: 917 FF-FLINGPEIMSKLAGESESNLRKAFEEA--------DXNSPAIIFXDELDAMAQ 1057
++NGPEI++K G+SE N+RK F +A + + II DELDA+ +
Sbjct: 331 REPKIVNGPEILNKYVGQSEENVRKLFADAEREYRDRGEESGLHIIIFDELDAICK 386
>SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 449
Score = 37.9 bits (84), Expect = 0.003
Identities = 17/38 (44%), Positives = 23/38 (60%)
Frame = +2
Query: 794 LRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVANE 907
LR+ + G+ RG L+YGPPG+GKT A+A E
Sbjct: 228 LRNSQWYDTRGIPYRRGYLLYGPPGSGKTSFLYALAGE 265
>SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 465
Score = 35.9 bits (79), Expect = 0.012
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Frame = +2
Query: 839 RGILMYGPPGTGKTLIARAVANETGAF--FFLINGPEIMSKLAGESESNLR 985
R ILM GPP TGKT IA +A G+ F ++ E+ S ++E+ L+
Sbjct: 66 RAILMAGPPSTGKTAIAMGMAQSLGSDTPFVTLSASEVYSLEMSKTEALLQ 116
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 31.9 bits (69), Expect = 0.19
Identities = 18/42 (42%), Positives = 24/42 (57%)
Frame = +2
Query: 809 LFKAIGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLIN 934
+ +A+ V P IL+ G PG GKT + A+A ETG IN
Sbjct: 1552 VLRALQVLKP--ILLEGSPGVGKTSLITALARETGHQLVRIN 1591
Score = 29.9 bits (64), Expect = 0.77
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +2
Query: 845 ILMYGPPGTGKTLIARAVANETGAFFFLINGPE 943
IL+ GP +GKT + VA +TG F IN E
Sbjct: 897 ILIQGPTSSGKTSMIEYVAKKTGHKFVRINNHE 929
>SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 456
Score = 31.9 bits (69), Expect = 0.19
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 5/56 (8%)
Frame = +2
Query: 839 RGILMYGPPGTGKTLIARAVANETG--AFFFLINGPEIMSKLAGESES---NLRKA 991
+G+L G GTGKT +A A+A E G F + G E+ S ++E+ N R+A
Sbjct: 65 KGVLFAGGAGTGKTALALAIAQELGPKVPFCPMVGSEVYSSEIKKTEALMENFRRA 120
>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 934
Score = 31.5 bits (68), Expect = 0.25
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +2
Query: 839 RGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 955
+ +L+ GPPG GKT A VA G +N + SK
Sbjct: 410 KAVLLSGPPGIGKTTAAHLVAKLEGYDVLELNASDTRSK 448
>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1067
Score = 31.1 bits (67), Expect = 0.33
Identities = 22/105 (20%), Positives = 51/105 (48%), Gaps = 9/105 (8%)
Frame = +2
Query: 770 IKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVANETGA--FFFLINGPE 943
+K++ + L ++ K G + + + GPPG GKT + +++A+ F F + G
Sbjct: 549 LKDVKDRVLELVAVGKLRGTMQGKIMCLVGPPGVGKTSVGKSIASALNREFFRFSVGGLT 608
Query: 944 IMSKLAGESES-------NLRKAFEEADXNSPAIIFXDELDAMAQ 1057
++++ G + + +A ++ +P +I DE+D + +
Sbjct: 609 DVAEIKGHRRTYIGAMPGKIVQALKKVQTENP-LILIDEIDKVGK 652
>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
Nup132|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1162
Score = 29.9 bits (64), Expect = 0.77
Identities = 19/81 (23%), Positives = 38/81 (46%)
Frame = -2
Query: 973 LRFSRQLRHDLRSIN*KEESSCFISNSTSNECFSGTRRPIHENAAWRLHSNSLEQ*RMTQ 794
L RQ+ + LR + K S ++ N+ E + + I + +RL ++ + +
Sbjct: 540 LDVDRQVLYKLRVMGEKCNSVRYLWNTIDTEFSTVSHSLIFQRIIYRLTQSASSDNALRE 599
Query: 793 WQLHHLLNLRQLFATTADVII 731
W LH++ ++ QL A + I
Sbjct: 600 WFLHNIESIDQLIAQAHEFCI 620
>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 905
Score = 29.5 bits (63), Expect = 1.0
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +2
Query: 830 KPPRGILMYGPPGTGKTLIARAVAN 904
+P L GP GTGKTL+ +A+A+
Sbjct: 612 QPIASFLFCGPSGTGKTLLTKALAS 636
>SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein
S15a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 130
Score = 28.7 bits (61), Expect = 1.8
Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 3/27 (11%)
Frame = -1
Query: 494 QLNHQLAVCGLV---FHISLKDTERWI 423
QLN ++ CG++ F++ LKD E+W+
Sbjct: 64 QLNGRINKCGVISPRFNVKLKDIEKWV 90
>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1842
Score = 28.7 bits (61), Expect = 1.8
Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 3/81 (3%)
Frame = +2
Query: 884 IARAVANETGAFFFLINGPE---IMSKLAGESESNLRKAFEEADXNSPAIIFXDELDAMA 1054
I RAVA ET + NGP+ + K A + +NL+ F + A+ +L M
Sbjct: 911 IRRAVAAETAFDHSITNGPDSEAVFQKTAIQPRANLKFNFPKLKPYE-ALSHLSDLRGMV 969
Query: 1055 QXXKXPRXXGKXXVSSXGPFG 1117
K P G S GP+G
Sbjct: 970 DLEKVPVVTG---FSEVGPWG 987
>SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein
S15a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 130
Score = 28.7 bits (61), Expect = 1.8
Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 3/27 (11%)
Frame = -1
Query: 494 QLNHQLAVCGLV---FHISLKDTERWI 423
QLN ++ CG++ F++ LKD E+W+
Sbjct: 64 QLNGRINKCGVISPRFNVKLKDIEKWV 90
>SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 193
Score = 28.7 bits (61), Expect = 1.8
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = +2
Query: 848 LMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 955
++ GP G+GKT +A+AV+ + G F I G ++ K
Sbjct: 18 VVIGPAGSGKTTMAKAVSEKLG--FEYIEGDDLHPK 51
>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 28.7 bits (61), Expect = 1.8
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +2
Query: 845 ILMYGPPGTGKTLIARAVANE 907
+L YGPPGTGKT A A +
Sbjct: 59 MLFYGPPGTGKTSTILACARK 79
>SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 175
Score = 28.3 bits (60), Expect = 2.3
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +2
Query: 845 ILMYGPPGTGKTLIARAVANET 910
I++ G PGTGKT +A VA T
Sbjct: 11 IIICGTPGTGKTTLAEQVAETT 32
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 27.9 bits (59), Expect = 3.1
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +2
Query: 833 PPRGILMYGPPGTGK-TLIARAVANETGAFFFLINGP 940
PP + + GPPGTGK TLI V + I GP
Sbjct: 73 PPVIVAVMGPPGTGKSTLIKSLVRRYSKYTISQITGP 109
>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
E3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 27.9 bits (59), Expect = 3.1
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -1
Query: 464 LVFHISLKDTERWIP-HQKDAHEGCFSQHGSSEFSHQG 354
LV + LKD WI + + E F G ++FS+QG
Sbjct: 435 LVSDLYLKDLWSWIHLSHRQSEESLFGDTGDTDFSYQG 472
>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
S0B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 26.6 bits (56), Expect = 7.2
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +2
Query: 650 VAPDTVIHCDGEPIKREEEEEALNAVGYDD 739
V PD + D E I+REEE++A A ++
Sbjct: 200 VMPDLYFYRDPEEIEREEEQKAAAAAAAEE 229
>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
Upf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 26.6 bits (56), Expect = 7.2
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +2
Query: 848 LMYGPPGTGKTLIARAV 898
L+ GPPGTGKT+ + +V
Sbjct: 411 LIQGPPGTGKTVTSASV 427
>SPAC23D3.02 |rfc2||DNA replication factor C complex subunit
Rfc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 340
Score = 26.6 bits (56), Expect = 7.2
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 845 ILMYGPPGTGKTLIARAVANE 907
+L YG PGTGKT A++ E
Sbjct: 55 MLFYGSPGTGKTSTILALSRE 75
>SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 454
Score = 26.2 bits (55), Expect = 9.5
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +2
Query: 743 GGCRKQLAQIKEMVELPLRHPSLFKAIGVKP-PRGILMYGPPGTGKTLI 886
G ++ +K+M + P+L ++ V P+GI +YG G GKT +
Sbjct: 87 GSILSWISPLKKMFSRK-KSPTLTSSLPVPGMPKGIYLYGDVGCGKTAL 134
>SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 695
Score = 26.2 bits (55), Expect = 9.5
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 827 VKPPRGILMYGPPGTGKTLIARAVANETGAF 919
VKP +L+ GPP +GK + + + G+F
Sbjct: 277 VKPRTKLLLLGPPKSGKKTLLSRLFFQIGSF 307
>SPAC139.05 |||succinate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 493
Score = 26.2 bits (55), Expect = 9.5
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 956 LAGESESNLRKAFEEADXNSPAIIFXD 1036
L G+S S ++K E N+P I+F D
Sbjct: 250 LMGQSASTIKKVSMELGGNAPFIVFPD 276
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 26.2 bits (55), Expect = 9.5
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +2
Query: 857 GPPGTGKTLIARAVANETGAFFFLIN 934
GP GTGKT +AV+ G F+ N
Sbjct: 1890 GPAGTGKTETVKAVSAYLGKNVFVFN 1915
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,074,897
Number of Sequences: 5004
Number of extensions: 77090
Number of successful extensions: 303
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 272
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 294
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 677341880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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