Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_C08
         (1292 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI00005A483C Cluster: PREDICTED: similar to ciliary ro...    37   0.99 
UniRef50_Q9M7I5 Cluster: Arabinogalactan protein; n=1; Zea mays|...    35   5.3  
UniRef50_UPI00006C10E4 Cluster: PREDICTED: hypothetical protein;...    34   9.2  
UniRef50_Q7UHQ9 Cluster: Putative uncharacterized protein; n=1; ...    34   9.2  

>UniRef50_UPI00005A483C Cluster: PREDICTED: similar to ciliary rootlet
            coiled-coil, rootletin; n=1; Canis lupus familiaris|Rep:
            PREDICTED: similar to ciliary rootlet coiled-coil,
            rootletin - Canis familiaris
          Length = 1070

 Score = 37.1 bits (82), Expect = 0.99
 Identities = 23/61 (37%), Positives = 27/61 (44%), Gaps = 9/61 (14%)
 Frame = +2

Query: 92   PGLGKSSSPGPRLWXRST--------TTAWQSRWWCAARQQARSPCLRV-PAAPSSPCXP 244
            P    S  PGPR+   +T            +S WWC    +A  P LRV PA PS P  P
Sbjct: 852  PARQGSGHPGPRVCREATGQPAAITHRAGRRSLWWCVGHPEAPGPRLRVTPALPSLPQAP 911

Query: 245  G 247
            G
Sbjct: 912  G 912


>UniRef50_Q9M7I5 Cluster: Arabinogalactan protein; n=1; Zea
           mays|Rep: Arabinogalactan protein - Zea mays (Maize)
          Length = 274

 Score = 34.7 bits (76), Expect = 5.3
 Identities = 21/68 (30%), Positives = 27/68 (39%)
 Frame = +2

Query: 107 SSSPGPRLWXRSTTTAWQSRWWCAARQQARSPCLRVPAAPSSPCXPGTKFVPLNKXHXNL 286
           +S+PG R    +T+TAW S W  +     R P  R   AP   C       P      + 
Sbjct: 70  TSAPGRRPRGTTTSTAWSSPWTASPCASCREPTPRGRPAPCRRCPSPAPARPTACSSRST 129

Query: 287 ADQPSXST 310
           A  PS  T
Sbjct: 130 AGSPSGPT 137


>UniRef50_UPI00006C10E4 Cluster: PREDICTED: hypothetical protein;
           n=4; Catarrhini|Rep: PREDICTED: hypothetical protein -
           Homo sapiens
          Length = 160

 Score = 33.9 bits (74), Expect = 9.2
 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = -3

Query: 219 AGTRRHGERAC--CLAAHHQRDCHAVVVDRXQSLGPGDDDLPRPGC 88
           AG   + +R C    A+ H+R CH V      S GP D +LP  GC
Sbjct: 70  AGALLYEKRVCRRLEASGHERGCHQVNACALASWGPEDRELPSRGC 115


>UniRef50_Q7UHQ9 Cluster: Putative uncharacterized protein; n=1;
           Pirellula sp.|Rep: Putative uncharacterized protein -
           Rhodopirellula baltica
          Length = 163

 Score = 33.9 bits (74), Expect = 9.2
 Identities = 15/48 (31%), Positives = 20/48 (41%)
 Frame = -3

Query: 237 HGELGAAGTRRHGERACCLAAHHQRDCHAVVVDRXQSLGPGDDDLPRP 94
           HG+  A+ T  HGE  CC  AH   D H        S    + +  +P
Sbjct: 52  HGQTHASHTHDHGEHGCCHHAHTSADEHETTCQSDASCASTESESDQP 99


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 647,611,188
Number of Sequences: 1657284
Number of extensions: 9794143
Number of successful extensions: 25451
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 23508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25349
length of database: 575,637,011
effective HSP length: 103
effective length of database: 404,936,759
effective search space used: 132414320193
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)