Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_C08
         (1292 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0562 - 23307526-23307875,23308149-23308452,23308543-23308647     33   0.49 
09_02_0082 - 4060018-4061604                                           29   8.0  

>01_05_0562 - 23307526-23307875,23308149-23308452,23308543-23308647
          Length = 252

 Score = 33.1 bits (72), Expect = 0.49
 Identities = 19/51 (37%), Positives = 19/51 (37%)
 Frame = -2

Query: 775 PPLXXXKPFPXPXKPGPXIXXXXXXKXXQKPNPXXPGVGXXXKPKKXXXXP 623
           PP     P P P KPGP        K   KP P  P  G   KPK     P
Sbjct: 169 PPKPKPGPKPKPPKPGP---KPKPPKPGPKPKPKPPKPGPKPKPKPPKPGP 216



 Score = 31.1 bits (67), Expect = 2.0
 Identities = 17/45 (37%), Positives = 17/45 (37%)
 Frame = -2

Query: 802 PXIXGKTXXPPLXXXKPFPXPXKPGPXIXXXXXXKXXQKPNPXXP 668
           P   G    PP    KP P P KPGP        K   KP P  P
Sbjct: 180 PPKPGPKPKPPKPGPKPKPKPPKPGPK-PKPKPPKPGPKPKPGPP 223



 Score = 30.3 bits (65), Expect = 3.5
 Identities = 18/50 (36%), Positives = 18/50 (36%)
 Frame = -2

Query: 772 PLXXXKPFPXPXKPGPXIXXXXXXKXXQKPNPXXPGVGXXXKPKKXXXXP 623
           P    KP P   KPGP        K   KP P  PG     KP K    P
Sbjct: 161 PKPKPKPSPPKPKPGP---KPKPPKPGPKPKPPKPGPKPKPKPPKPGPKP 207


>09_02_0082 - 4060018-4061604
          Length = 528

 Score = 29.1 bits (62), Expect = 8.0
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = +2

Query: 122 PRLWXRSTTTAWQSRWWCAARQQARSPCLRVPAAPSSPCXPGTKFVP 262
           PR W  S TT      +    + + S  LR PAAP++   P   F+P
Sbjct: 8   PRGWTVSPTTGRYRFGYGFGGESSSSTALRTPAAPTTTRGPTLLFLP 54


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,662,751
Number of Sequences: 37544
Number of extensions: 320720
Number of successful extensions: 871
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 866
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 4027319592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)