Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_C07
         (1219 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    31   0.43 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   1.7  

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 30.7 bits (66), Expect = 0.43
 Identities = 23/70 (32%), Positives = 23/70 (32%), Gaps = 1/70 (1%)
 Frame = +3

Query: 483 GXGGXXFGXXSVXPPXKXXAXG-FGGGGGVXXXXXGGXGFXXXXGXXXXKXFXXXGXKRG 659
           G G   FG  S  PP      G FGG GG      G  GF    G          G   G
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGG 246

Query: 660 XXPKRGGXGG 689
                GG GG
Sbjct: 247 FGGGLGGFGG 256



 Score = 29.1 bits (62), Expect = 1.3
 Identities = 23/74 (31%), Positives = 23/74 (31%)
 Frame = +3

Query: 546 GFGGGGGVXXXXXGGXGFXXXXGXXXXKXFXXXGXKRGXXPKRGGXGGFXXXAPPPXXF* 725
           GFGGG G      GG G     G          G   G     GG GGF      P  F 
Sbjct: 192 GFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGG---PGGFG 248

Query: 726 KXXXXFXGGXXPXG 767
                F GG    G
Sbjct: 249 GGLGGFGGGPGGFG 262


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 12/32 (37%), Positives = 13/32 (40%)
 Frame = -1

Query: 505 PKXXPPXPXGXXXFXTXKNPPXPPPXXKKKKK 410
           P   PP P     F     PP PPP    KK+
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPPGYVKKR 36



 Score = 27.1 bits (57), Expect = 5.3
 Identities = 12/32 (37%), Positives = 14/32 (43%)
 Frame = -1

Query: 505 PKXXPPXPXGXXXFXTXKNPPXPPPXXKKKKK 410
           P   PP P         + PP PPP   KK+K
Sbjct: 6   PGNPPPPPPPPGFEPPSQPPPPPPPGYVKKRK 37


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,821,204
Number of Sequences: 5004
Number of extensions: 18807
Number of successful extensions: 29
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 659412242
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)