Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP26_F_C04
(1203 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 252 1e-67
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 164 2e-41
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 142 9e-35
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 111 2e-25
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 108 1e-24
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 107 2e-24
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 105 9e-24
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 105 1e-23
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 105 2e-23
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 100 5e-22
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 98 2e-21
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 96 7e-21
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 94 4e-20
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 94 4e-20
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 93 9e-20
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 91 4e-19
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 89 1e-18
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 84 4e-17
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 83 7e-17
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 80 7e-16
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 72 1e-13
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 68 2e-12
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 64 3e-11
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 29 1.7
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 29 1.7
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 28 2.2
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 252 bits (616), Expect = 1e-67
Identities = 123/200 (61%), Positives = 156/200 (78%), Gaps = 1/200 (0%)
Frame = +3
Query: 390 TKEXDSEKKSNNDLPGSSLCLGILSD-QKFTALEGTVCEPTLLGIKDMGFVTMTEIQAKA 566
++E D+E + +L SD +KF+ L+ + E IK+MGF TMTEIQ ++
Sbjct: 62 SEELDNENEDERVQKSVNLNASSTSDIEKFSDLQ--LSENIQKAIKEMGFETMTEIQKRS 119
Query: 567 IPPLLEGRDLVGAAKTGSGKTLAFLIPSIDLIYKLKFKPRNGTGVIILSPTRELSMQTFG 746
IPPLL GRD++GAAKTGSGKTLAFLIP+I+++Y LKFKPRNGTGVII+SPTREL++Q FG
Sbjct: 120 IPPLLAGRDVLGAAKTGSGKTLAFLIPTIEMLYALKFKPRNGTGVIIISPTRELALQIFG 179
Query: 747 VLMELMKYHHHTYGLVMGGANRSTEAQKLSKGINILVATPGRLLDHLQNTPXFWYKNLQC 926
V EL+KYHH T+G+V+GGANR EA KL KG+N+LVATPGRLLDHLQNT F ++NL+
Sbjct: 180 VAKELLKYHHQTFGIVIGGANRRAEADKLVKGVNLLVATPGRLLDHLQNTKGFVFRNLRS 239
Query: 927 LVIDEXDRILEXGFEEEVNR 986
LVIDE DRILE GFE+E+ +
Sbjct: 240 LVIDEADRILEIGFEDEMRQ 259
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 164 bits (398), Expect = 2e-41
Identities = 76/156 (48%), Positives = 112/156 (71%)
Frame = +3
Query: 501 EPTLLGIKDMGFVTMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPSIDLIYKLKFK 680
+PT +K+ F+T+TEIQ + IP L+GRD++GAAKTGSGKTLAF++P I+ +Y+ K+
Sbjct: 48 QPTKSALKNAHFITLTEIQKQCIPSALKGRDILGAAKTGSGKTLAFIVPLIENLYRKKWT 107
Query: 681 PRNGTGVIILSPTRELSMQTFGVLMELMKYHHHTYGLVMGGANRSTEAQKLSKGINILVA 860
+G G +++SPTREL++QTF L+++ + H + GL++GG N E ++LS+ +NILV
Sbjct: 108 SLDGLGALVISPTRELAIQTFETLVKIGRLHSFSAGLIIGGNNYKEEKERLSR-MNILVC 166
Query: 861 TPGRLLDHLQNTPXFWYKNLQCLVIDEXDRILEXGF 968
TPGRLL H+ F LQ L++DE DRIL+ GF
Sbjct: 167 TPGRLLQHIDQAVNFDTSGLQMLILDEADRILDMGF 202
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 142 bits (344), Expect = 9e-35
Identities = 81/204 (39%), Positives = 123/204 (60%), Gaps = 5/204 (2%)
Frame = +3
Query: 504 PTLLGIKDMGFVTMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPSID-LIYKLKFK 680
P L G+ ++GF T+IQ K IP L G+D+VGAA TGSGKT AF++P ++ L+Y+ K
Sbjct: 269 PILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILERLLYRPKKV 328
Query: 681 PRNGTGVIILSPTRELSMQTFGVLMELMKYHHHTYGLVMGGANRSTEAQKLSKGINILVA 860
P T V+IL PTREL+MQ V ++ + L +GG + + Q+L K +I++A
Sbjct: 329 PT--TRVLILCPTRELAMQCHSVATKIASFTDIMVCLCIGGLSLKLQEQELRKRPDIVIA 386
Query: 861 TPGRLLDHLQNTPXFWYKNLQCLVIDEXDRILEXGFEEEVNRS*NAAKRGK---LCYSVL 1031
TPGR +DH++N+ F +N++ +V+DE DR+LE GF +E+N A + + L + +
Sbjct: 387 TPGRFIDHMRNSQGFTVENIEIMVMDEADRMLEDGFADELNEIIQACPKSRQTMLFSATM 446
Query: 1032 XNKXLSLL-XGLNXPGCXVXDXKK 1100
+K L+ LN P D KK
Sbjct: 447 TDKVDDLIRLSLNRPVRVFVDNKK 470
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 111 bits (267), Expect = 2e-25
Identities = 70/193 (36%), Positives = 109/193 (56%)
Frame = +3
Query: 390 TKEXDSEKKSNNDLPGSSLCLGILSDQKFTALEGTVCEPTLLGIKDMGFVTMTEIQAKAI 569
+ E ++ NN+ P + LG++ + +CE + +GF T T IQ +AI
Sbjct: 31 SSENNNGDSQNNEAPKTFKELGVIDE---------LCE----ACEKLGFKTPTPIQQEAI 77
Query: 570 PPLLEGRDLVGAAKTGSGKTLAFLIPSIDLIYKLKFKPRNGTGVIILSPTRELSMQTFGV 749
P +L RD++G A+TGSGKT AF +P I ++ P + ++L+PTREL+ Q
Sbjct: 78 PVVLNKRDVIGLAQTGSGKTAAFALPVIQELWN---NP-SPFFAVVLAPTRELAYQISEQ 133
Query: 750 LMELMKYHHHTYGLVMGGANRSTEAQKLSKGINILVATPGRLLDHLQNTPXFWYKNLQCL 929
+ +++GG + T+A LSK ++LV TPGRL+DHL+NT F KNL+ L
Sbjct: 134 FEAIGGSIGVRSVVIVGGMDMVTQAVALSKKPHVLVCTPGRLMDHLENTKGFSLKNLKYL 193
Query: 930 VIDEXDRILEXGF 968
++DE DR+L+ F
Sbjct: 194 IMDEADRLLDMDF 206
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 108 bits (260), Expect = 1e-24
Identities = 64/163 (39%), Positives = 90/163 (55%), Gaps = 3/163 (1%)
Frame = +3
Query: 507 TLLGIKDMGFVTMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPSIDLIYKLK-FKP 683
T+ I +G+ T IQA+AIP + GRD++G AKTGSGKT+AFL+P I + K
Sbjct: 429 TISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLKT 488
Query: 684 RNGTGVIILSPTRELSMQTFGVLMELMKYHHHTYGLVMGGANRSTEAQKLSKGINILVAT 863
G II++PTREL++Q F +K + GGA + L +G I+V T
Sbjct: 489 GEGPIAIIMTPTRELAVQIFRECKPFLKLLNIRACCAYGGAPIKDQIADLKRGAEIVVCT 548
Query: 864 PGRLLDHLQNTPXFWYKNLQC--LVIDEXDRILEXGFEEEVNR 986
PGR++D L +C LV+DE DR+ + GFE +V R
Sbjct: 549 PGRMIDVLSANAGRVTNLHRCTYLVLDEADRMFDLGFEPQVMR 591
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 107 bits (258), Expect = 2e-24
Identities = 59/157 (37%), Positives = 92/157 (58%), Gaps = 1/157 (0%)
Frame = +3
Query: 519 IKDMGFVTMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPSI-DLIYKLKFKPRNGT 695
+K +GF T IQ +A P + GRD+VG + TGSGKTL++ +P+I + + P +G
Sbjct: 137 VKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIVHINAQPLLSPGDGP 196
Query: 696 GVIILSPTRELSMQTFGVLMELMKYHHHTYGLVMGGANRSTEAQKLSKGINILVATPGRL 875
V++L+PTREL++Q + K V GG R + + L +G+ I +ATPGRL
Sbjct: 197 IVLVLAPTRELAVQIQQECTKFGKSSRIRNTCVYGGVPRGPQIRDLIRGVEICIATPGRL 256
Query: 876 LDHLQNTPXFWYKNLQCLVIDEXDRILEXGFEEEVNR 986
LD L + + + LV+DE DR+L+ GFE ++ +
Sbjct: 257 LDMLDSNKTN-LRRVTYLVLDEADRMLDMGFEPQIRK 292
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 105 bits (253), Expect = 9e-24
Identities = 64/157 (40%), Positives = 89/157 (56%)
Frame = +3
Query: 510 LLGIKDMGFVTMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPSIDLIYKLKFKPRN 689
L I GF T IQ K IP LLEGRD+VG A+TGSGKT AF+IP I+ + +
Sbjct: 81 LRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIE--HLKSTLANS 138
Query: 690 GTGVIILSPTRELSMQTFGVLMELMKYHHHTYGLVMGGANRSTEAQKLSKGINILVATPG 869
T +ILSP REL++QT V+ + K ++GG + + LS +I+VATPG
Sbjct: 139 NTRALILSPNRELALQTVKVVKDFSKGTDLRSVAIVGGVSLEEQFSLLSGKPDIVVATPG 198
Query: 870 RLLDHLQNTPXFWYKNLQCLVIDEXDRILEXGFEEEV 980
R L HL+ +++ +V DE DR+ E GF ++
Sbjct: 199 RFL-HLKVEMKLELSSIEYVVFDEADRLFEMGFAAQL 234
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 105 bits (252), Expect = 1e-23
Identities = 59/161 (36%), Positives = 92/161 (57%), Gaps = 8/161 (4%)
Frame = +3
Query: 528 MGFVTMTEIQAKAIPPLL--EGRDLVGAAKTGSGKTLAFLIPSIDLIYKLK---FKPRNG 692
M T IQ+ +P LL + +D A+TGSGKTLA+L+P + + +L +G
Sbjct: 157 MNISAPTAIQSCCLPALLNTDDKDAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSG 216
Query: 693 TGVIILSPTRELSMQTFGVLMELMKY---HHHTYGLVMGGANRSTEAQKLSKGINILVAT 863
+I++PTREL Q + V +L H V+GG + +E ++ KG+NIL+ T
Sbjct: 217 IYAVIMAPTRELCQQIYNVANKLNNNPLSHWIVSCNVIGGEKKKSEKARIRKGVNILIGT 276
Query: 864 PGRLLDHLQNTPXFWYKNLQCLVIDEXDRILEXGFEEEVNR 986
PGRL DHL+NT ++ +V+DE DR+++ GFEE + +
Sbjct: 277 PGRLADHLENTEALDVSQVRWVVLDEGDRLMDMGFEETLTK 317
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 105 bits (251), Expect = 2e-23
Identities = 61/145 (42%), Positives = 94/145 (64%)
Frame = +3
Query: 546 TEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPSIDLIYKLKFKPRNGTGVIILSPTRE 725
T IQA P LL GRD+VG A+TGSGKT+AF IP++ + L ++ V+++SPTRE
Sbjct: 189 TPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIPALQYLNGLS-DNKSVPRVLVVSPTRE 247
Query: 726 LSMQTFGVLMELMKYHHHTYGLVMGGANRSTEAQKLSKGINILVATPGRLLDHLQNTPXF 905
L++QT+ L L++ + +V GGA +S +A + +K ++++ TPGRLLD L N
Sbjct: 248 LAIQTYENLNSLIQGTNLKAVVVYGGAPKSEQA-RAAKNASVIIGTPGRLLD-LINDGSI 305
Query: 906 WYKNLQCLVIDEXDRILEXGFEEEV 980
+ LV+DE DR+L+ GFE+++
Sbjct: 306 DCSQVGYLVLDEADRMLDTGFEQDI 330
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 100 bits (239), Expect = 5e-22
Identities = 62/160 (38%), Positives = 94/160 (58%), Gaps = 4/160 (2%)
Frame = +3
Query: 519 IKDMGFVTMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPSIDLIYKL----KFKPR 686
+K + + + IQ AIP LL+ +DL+G A+TGSGKT AF+IP I I KL +
Sbjct: 264 LKKVNYKEPSSIQRAAIPVLLQRKDLIGIAETGSGKTAAFIIPLIIAISKLPPLTESNMH 323
Query: 687 NGTGVIILSPTRELSMQTFGVLMELMKYHHHTYGLVMGGANRSTEAQKLSKGINILVATP 866
G ++L+PTREL+ Q + + V+GG ++ ++S+G +I+VATP
Sbjct: 324 LGPYAVVLAPTRELAQQIQVEGNKFAEPLGFRCVSVVGGHAFEEQSFQMSQGAHIVVATP 383
Query: 867 GRLLDHLQNTPXFWYKNLQCLVIDEXDRILEXGFEEEVNR 986
GRLLD L+ F +V+DE DR+L+ GFE++VN+
Sbjct: 384 GRLLDCLERR-LFVLSQCTYVVMDEADRMLDMGFEDDVNK 422
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 97.9 bits (233), Expect = 2e-21
Identities = 63/173 (36%), Positives = 95/173 (54%), Gaps = 8/173 (4%)
Frame = +3
Query: 531 GFVTMTEIQAKAIPPLLEGRD-LVGAAKTGSGKTLAFLIPSIDLIYKLKFKPR-NGTGV- 701
GF MT +Q + + + + V AKTG+GKTLAFL+ + + LK KPR N + +
Sbjct: 57 GFEKMTPVQQRVLNEVFPNEENAVVQAKTGTGKTLAFLLVAFKDV--LKGKPRLNSSKIH 114
Query: 702 -IILSPTRELSMQTFGVLMELMKYHHHTYGLVMGGANRSTEAQKLSKG-INILVATPGRL 875
+ILSPTREL++Q F +L +GG ++ E + +G N+L+ATPGRL
Sbjct: 115 SVILSPTRELALQIFEEARKLTYGTGIRVSYAIGGNSKMREENAIRRGNANLLIATPGRL 174
Query: 876 LDHLQNTPXFWYKNLQCLVIDEXDRILEXGFEE---EVNRS*NAAKRGKLCYS 1025
DHLQN + ++DE DR+++ GF E ++ + K KLC+S
Sbjct: 175 EDHLQNPRILESLSTDSFILDEADRLMDMGFAESILNIHEAVTTTKTRKLCFS 227
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 96.3 bits (229), Expect = 7e-21
Identities = 58/157 (36%), Positives = 88/157 (56%), Gaps = 10/157 (6%)
Frame = +3
Query: 531 GFVTMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPSIDLIYKLKFKPRNGTGVIIL 710
GF MT +QA AIP L+ +DLV A TGSGKTLA+L+P D + + + G G +I+
Sbjct: 20 GFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFDKVTR-RDTDETGLGALIV 78
Query: 711 SPTRELSMQTFGVLMELMKYHHHTY--------GLVMGGANRSTE--AQKLSKGINILVA 860
+PTREL+ Q F V EL+ Y + + +GG T A K ++++
Sbjct: 79 APTRELATQIFNVTKELLAYQPDSLDGGKKLVADMYIGGKGTLTNDLASFREKNPSVVIG 138
Query: 861 TPGRLLDHLQNTPXFWYKNLQCLVIDEXDRILEXGFE 971
TPGRL + L + K+L+ L++DE D +++ GF+
Sbjct: 139 TPGRLNEMLSHISS---KHLEILILDEADTLIDMGFQ 172
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 595
Score = 93.9 bits (223), Expect = 4e-20
Identities = 59/163 (36%), Positives = 89/163 (54%), Gaps = 4/163 (2%)
Frame = +3
Query: 534 FVTMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPSIDLIYKLKFKPRNGTGV--II 707
F T +Q++ IP LEG+DLV A+TGSGKT A+LIP ++L+ K K N G+ ++
Sbjct: 34 FEKPTSVQSETIPLALEGKDLVAQARTGSGKTAAYLIPILELLLKQKQIDENQRGIFALL 93
Query: 708 LSPTRELSMQTFGVLMELMKYHHHTYGLVMGGANRSTEAQK--LSKGINILVATPGRLLD 881
L PTREL+ Q + VL +L + + N S Q+ L +I++ATP R +
Sbjct: 94 LVPTRELAQQVYNVLEKLTAFCSKHIRFINVATNSSDTVQRPLLLDLPDIVIATPSRCVV 153
Query: 882 HLQNTPXFWYKNLQCLVIDEXDRILEXGFEEEVNRS*NAAKRG 1010
H+ + L+ LVIDE D +L G+ E++ + RG
Sbjct: 154 HVA-SGVLPLDKLKFLVIDEADLMLSFGYNEDMKTLSRSLPRG 195
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 93.9 bits (223), Expect = 4e-20
Identities = 52/160 (32%), Positives = 94/160 (58%)
Frame = +3
Query: 501 EPTLLGIKDMGFVTMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPSIDLIYKLKFK 680
E L GI G+ T + +Q++AI + +GRD++ A++G+GKT F SI ++ +
Sbjct: 30 EDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQAQSGTGKTATF---SIGILQSIDLS 86
Query: 681 PRNGTGVIILSPTRELSMQTFGVLMELMKYHHHTYGLVMGGANRSTEAQKLSKGINILVA 860
R+ T +ILSPTREL++Q V++ L + + +GG + + +KL G +++
Sbjct: 87 VRD-TQALILSPTRELAVQIQNVVLALGDHMNVQCHACIGGTSVGNDIKKLDYGQHVVSG 145
Query: 861 TPGRLLDHLQNTPXFWYKNLQCLVIDEXDRILEXGFEEEV 980
TPGR+ D ++ +N++ L++DE D +L GF+E++
Sbjct: 146 TPGRVTDMIRRR-NLRTRNVKMLILDEADELLNQGFKEQI 184
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 92.7 bits (220), Expect = 9e-20
Identities = 56/153 (36%), Positives = 86/153 (56%)
Frame = +3
Query: 510 LLGIKDMGFVTMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPSIDLIYKLKFKPRN 689
L+GI + GF + IQ ++IP L GRD++ AK G+GKT AF+IPS++ + K K +
Sbjct: 56 LMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEKVDTKKSKIQ- 114
Query: 690 GTGVIILSPTRELSMQTFGVLMELMKYHHHTYGLVMGGANRSTEAQKLSKGINILVATPG 869
+IL PTREL++QT V L K+ + + GG + +L+ ++I+V TPG
Sbjct: 115 ---TLILVPTRELALQTSQVCKTLGKHMNVKVMVTTGGTTLRDDIIRLNDTVHIVVGTPG 171
Query: 870 RLLDHLQNTPXFWYKNLQCLVIDEXDRILEXGF 968
R+LD L + V+DE D++L F
Sbjct: 172 RVLD-LAGKGVADFSECTTFVMDEADKLLSPEF 203
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 90.6 bits (215), Expect = 4e-19
Identities = 56/158 (35%), Positives = 91/158 (57%), Gaps = 3/158 (1%)
Frame = +3
Query: 519 IKDMGFVTMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPSIDLIYKLKFKPRNGTG 698
+K + T+IQ I +LEGR+ +G AKTGSGKT AF +P +I K P +G
Sbjct: 22 LKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALP---IIEKWSKDP-SGIF 77
Query: 699 VIILSPTRELSMQTFGVLMELMKYHHHTYGLVMGGANRSTEAQKLSKGINILVATPGRLL 878
+IL+PTREL++Q L + + L++GG + ++ LSK +++VATPGRL
Sbjct: 78 ALILTPTRELAIQIDEQFAALGANLNLKHALIVGGMDMIRQSIDLSKRPHVVVATPGRLA 137
Query: 879 DHLQNT---PXFWYKNLQCLVIDEXDRILEXGFEEEVN 983
D +++ + ++ LV+DE DR+L F ++++
Sbjct: 138 DLIRSNGEETIAGLRRIKFLVMDEADRLLSPTFADDLD 175
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 89.0 bits (211), Expect = 1e-18
Identities = 60/174 (34%), Positives = 95/174 (54%), Gaps = 17/174 (9%)
Frame = +3
Query: 510 LLGIKDMGFVTMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPSIDLIYK------- 668
L IK G+ T +Q +IP + GRDL+ A+TGSGKT FL P + L +
Sbjct: 181 LQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFPILSLAFDKGPAAVP 240
Query: 669 ------LKFKPRNG-TGVIILSPTRELSMQTFGVLMELMKYHHHTY---GLVMGGANRST 818
+ ++PR +IL+PTREL Q + E K+ + ++ V GGA+
Sbjct: 241 VDQDAGMGYRPRKAYPTTLILAPTRELVCQ---IHEESRKFCYRSWVRPCAVYGGADIRA 297
Query: 819 EAQKLSKGINILVATPGRLLDHLQNTPXFWYKNLQCLVIDEXDRILEXGFEEEV 980
+ +++ +G ++L ATPGRL+D L + N++ LV+DE DR+L+ GFE ++
Sbjct: 298 QIRQIDQGCDLLSATPGRLVD-LIDRGRISLANIKFLVLDEADRMLDMGFEPQI 350
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 83.8 bits (198), Expect = 4e-17
Identities = 58/183 (31%), Positives = 92/183 (50%), Gaps = 2/183 (1%)
Frame = +3
Query: 486 EGTVCEPTLLGIKDMGFVTMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPSIDLIY 665
EG +CE +K T IQ AIP + RDL+ A TGSGKT+A+L P ++
Sbjct: 54 EGILCE----NLKKQNITECTTIQRYAIPTIGSKRDLLACAPTGSGKTIAYLFP---ILQ 106
Query: 666 KLKFKPRNGTGVIILSPTRELSMQTFGVLMELMKYHHHTYGLVMGGANRSTE--AQKLSK 839
KL+ G II++PTREL Q + E + + + + +N + A KL +
Sbjct: 107 KLQLHVPGGYRAIIVAPTRELCEQIYR-QAEKLSFGTSLKIIELSKSNEKIQEKAPKLRE 165
Query: 840 GINILVATPGRLLDHLQNTPXFWYKNLQCLVIDEXDRILEXGFEEEVNRS*NAAKRGKLC 1019
++ + TP RL+ +Q F + ++ V+DE DR+ E GF E+ + +A +C
Sbjct: 166 KYDMCIGTPMRLVQAIQTGLSF--EKVEFFVMDEADRLFEPGFIEQTDHILSACTSSNIC 223
Query: 1020 YSV 1028
S+
Sbjct: 224 KSL 226
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 83.0 bits (196), Expect = 7e-17
Identities = 57/164 (34%), Positives = 92/164 (56%), Gaps = 3/164 (1%)
Frame = +3
Query: 504 PTLLG-IKDMGFVTMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPSIDLIYKLKFK 680
P +LG + GF IQ+ IP G D++G A TGSGKTLAF IP ++ + L+
Sbjct: 131 PEMLGSLSKAGFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPILE--HCLRNV 188
Query: 681 PRNGTGVIILSPTRELSMQTFGVLMELMKYHHHTYGL-VMGGANRSTEAQKLSKGINILV 857
++++PTREL+ Q EL+K + + + GG + + L+K +++V
Sbjct: 189 DAKYVQALVVAPTRELAHQ-ICQHFELIKPSPNIRVMSITGGLAVQKQQRLLNKHPHVVV 247
Query: 858 ATPGRLLDHL-QNTPXFWYKNLQCLVIDEXDRILEXGFEEEVNR 986
ATPGRL + +N +K ++CLV+DE DR+L+ EE+++
Sbjct: 248 ATPGRLWSVINENNLTGNFKKIKCLVLDEADRLLQKSHFEELSK 291
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 79.8 bits (188), Expect = 7e-16
Identities = 54/173 (31%), Positives = 90/173 (52%), Gaps = 1/173 (0%)
Frame = +3
Query: 465 DQKFTALEGTVCEPTLL-GIKDMGFVTMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFL 641
D+ + +P LL GI GF + IQ +AI P+L RD++ A++G+GKT F
Sbjct: 15 DEVIDTFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATF- 73
Query: 642 IPSIDLIYKLKFKPRNGTGVIILSPTRELSMQTFGVLMELMKYHHHTYGLVMGGANRSTE 821
SI ++ K+ + +IL+PTREL+ Q V++ L + +GG +
Sbjct: 74 --SISVLQKIDTSLKQ-CQALILAPTRELAQQIQKVVVALGDLMNVECHACIGGTLVRDD 130
Query: 822 AQKLSKGINILVATPGRLLDHLQNTPXFWYKNLQCLVIDEXDRILEXGFEEEV 980
L G++++V TPGR+ D +Q +Q V+DE D +L GF++++
Sbjct: 131 MAALQAGVHVVVGTPGRVHDMIQRR-ALPTDAVQMFVLDEADEMLSRGFKDQI 182
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 72.1 bits (169), Expect = 1e-13
Identities = 50/142 (35%), Positives = 84/142 (59%), Gaps = 9/142 (6%)
Frame = +3
Query: 585 GRDLVGAAKTGSGKTLAFLIPSIDLIYKLKFKPRNGTGVIILSPTRELSMQTFGVLMELM 764
G D+ +A TGSGKTL+++IP + + + PR VI+ PTREL++Q + +
Sbjct: 173 GGDVCVSAATGSGKTLSYVIPIVQCLSH-RTVPRLRCVVIV--PTRELTVQ----VAKTF 225
Query: 765 KYHHHTYGLVM----GGANRSTEAQKLSKG-----INILVATPGRLLDHLQNTPXFWYKN 917
+Y+ GL + G + E +L+ I++LV+TPGRL+DH++N F ++
Sbjct: 226 EYYMSGAGLQVCAWTGQKSLRHETYQLNGDENECRIDVLVSTPGRLVDHIRNDESFSLQH 285
Query: 918 LQCLVIDEXDRILEXGFEEEVN 983
L+ +VIDE DR+L+ F++ V+
Sbjct: 286 LRYMVIDEADRLLDQSFQDWVD 307
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 68.1 bits (159), Expect = 2e-12
Identities = 57/167 (34%), Positives = 84/167 (50%), Gaps = 6/167 (3%)
Frame = +3
Query: 477 TALEGTVCEPTLL-GIKDMGFVTMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPSI 653
T + +P LL I D GF +E+Q IP + G D++ AK+G GKT F++ ++
Sbjct: 51 TGFRDFLLKPELLRAITDSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTL 110
Query: 654 DLIYKLKFKPRNG-TGVIILSPTRELSMQTFGVLMELMKYHHHTYGLVM-GGAN--RSTE 821
I +P +G V++L TREL+ Q KY V GG N + E
Sbjct: 111 QQI-----EPVDGEVSVLVLCHTRELAFQIKNEYARFSKYLPDVRTAVFYGGINIKQDME 165
Query: 822 AQK-LSKGINILVATPGRLLDHLQNTPXFWYKNLQCLVIDEXDRILE 959
A K SK +I+VATPGR L+ L +++ V+DE D++LE
Sbjct: 166 AFKDKSKSPHIVVATPGR-LNALVREKILKVNSVKHFVLDECDKLLE 211
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 64.5 bits (150), Expect = 3e-11
Identities = 52/171 (30%), Positives = 88/171 (51%), Gaps = 3/171 (1%)
Frame = +3
Query: 456 ILSDQKFTALEGTVCEPTLL-GIKDMGFVTMTEIQAKAIPPLLEG--RDLVGAAKTGSGK 626
+ S + F LE +P LL GI M F ++IQ KA+P LL R+++G +++G+GK
Sbjct: 110 LFSVKSFEELE---LKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGK 166
Query: 627 TLAFLIPSIDLIYKLKFKPRNGTGVIILSPTRELSMQTFGVLMELMKYHHHTYGLVMGGA 806
T AF + + + KP+ I L+P+REL+ Q V+ E+ KY G
Sbjct: 167 TAAFALTMLSRVDASVPKPQ----AICLAPSRELARQIMDVVTEMGKYTE--VKTAFGIK 220
Query: 807 NRSTEAQKLSKGINILVATPGRLLDHLQNTPXFWYKNLQCLVIDEXDRILE 959
+ + K+ I++ TPG ++D L ++++ V+DE D +L+
Sbjct: 221 DSVPKGAKID--AQIVIGTPGTVMD-LMKRRQLDARDIKVFVLDEADNMLD 268
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 28.7 bits (61), Expect = 1.7
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +3
Query: 576 LLEGRDLVGAAKTGSGKTLAFLIPSI 653
LL +L+ TG GK+L+FLIP++
Sbjct: 1203 LLNRMNLITVLPTGGGKSLSFLIPAL 1228
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 28.7 bits (61), Expect = 1.7
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +3
Query: 576 LLEGRDLVGAAKTGSGKTLAFLIPSI 653
LL +L+ TG GK+L+FLIP++
Sbjct: 1203 LLNRMNLITVLPTGGGKSLSFLIPAL 1228
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 28.3 bits (60), Expect = 2.2
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +3
Query: 555 QAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPSI 653
Q +AI L G+D+ TG GK+L + +P++
Sbjct: 524 QLEAINGTLSGKDVFILMPTGGGKSLCYQLPAV 556
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,623,755
Number of Sequences: 5004
Number of extensions: 64521
Number of successful extensions: 205
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 649451332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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