Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_C04
         (1203 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       99   9e-23
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   4.0  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   4.0  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 98.7 bits (235), Expect = 9e-23
 Identities = 61/165 (36%), Positives = 96/165 (58%), Gaps = 9/165 (5%)
 Frame = +3

Query: 519 IKDMGFVTMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIP--------SIDLIYKLK 674
           IK  G+   T +Q  A+P ++ GRDL+  A+TGSGKT AF +P        S+DL+    
Sbjct: 211 IKKSGYKKPTPVQKHALPIIMNGRDLMACAQTGSGKTAAFAVPIINTLLERSVDLVVTST 270

Query: 675 F-KPRNGTGVIILSPTRELSMQTFGVLMELMKYHHHTYGLVMGGANRSTEAQKLSKGINI 851
           + +P+    V+I+SPTREL++Q +  +++          +  GG +   +  KLS G +I
Sbjct: 271 YCEPQ----VVIVSPTRELTIQIWQQIVKFSLNSILKTVVAYGGTSVMHQRGKLSAGCHI 326

Query: 852 LVATPGRLLDHLQNTPXFWYKNLQCLVIDEXDRILEXGFEEEVNR 986
           LVATPGRLLD ++      + ++Q LV+DE DR+L+ GF   + +
Sbjct: 327 LVATPGRLLDFVEK-GRVKFSSVQFLVLDEADRMLDMGFLPSIEK 370


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.4 bits (48), Expect = 4.0
 Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 1/86 (1%)
 Frame = +2

Query: 551 DSSQSYTSFVGRQGSCGSCQNWLWKNTSVLNTVYRPYIQTKI*TKKW-YWSHHFVTHKRV 727
           D   ++ S+V    +  +  NWLW          R YI+ K  T+    +  + ++ K  
Sbjct: 51  DKGINWRSYVVCDVAYNNVNNWLWTPFIERGPANRMYIEIKFTTRDCSLFPGNALSCKET 110

Query: 728 INANIWRSHGIDEIPPPYIWSGDGWR 805
            +   +      + PPP  W  D ++
Sbjct: 111 FSLLYYEFDVATKEPPP--WETDSYK 134


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.4 bits (48), Expect = 4.0
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -3

Query: 817 VLLFAPPITRPYVWWWYFINSMRTPNVC 734
           V +  PPI  P+ +       MRT  VC
Sbjct: 605 VAVIVPPIIEPFTFQEGLSEGMRTRTVC 632


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 240,093
Number of Sequences: 438
Number of extensions: 4065
Number of successful extensions: 15
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 41090841
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)