Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_C02
         (1180 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom...    27   5.1  
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...    27   5.1  
SPAC6G9.05 |pcd1||coenzyme A diphosphatase |Schizosaccharomyces ...    26   8.8  
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo...    26   8.8  

>SPCC1183.07 |||U3 snoRNP-associated protein
           Rrp5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1690

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +2

Query: 770 VYKSETFIFCCCFNLSLYSESVFVTYK 850
           VYK +  + C C ++ L  E  F+++K
Sbjct: 804 VYKPQQSVTCVCLSVELSQEKAFMSFK 830


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 24/73 (32%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
 Frame = +2

Query: 26  LDXAHSGSAAGLCQGYPRATRPPQHVAGVAWARCDGRRRPATSLGLWTGRATDVTRLD-- 199
           +D   +G   G+C       RPPQH+ G   A+ D   R    L   T  A   +RLD  
Sbjct: 344 VDWCPTGFKIGICD------RPPQHIEGSEIAKVD---RAVCMLSNTTSIAEAWSRLDHK 394

Query: 200 -DSRPDKRAYP*W 235
            D    KRA+  W
Sbjct: 395 FDLMYSKRAFVHW 407


>SPAC6G9.05 |pcd1||coenzyme A diphosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 285

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 22/62 (35%), Positives = 26/62 (41%), Gaps = 4/62 (6%)
 Frame = -2

Query: 192 RVTSVARPVQRPSDVAG----RRRPSHRAHATPATCWGGRVARGXPWHSPAALPECAXSK 25
           R  SV  P+   S  A     +R P+ R+HA      GGRV      H  AAL E     
Sbjct: 115 RFASVLMPLVNTSQGASLLLTQRSPNLRSHAGQMCFPGGRVEPSDGSHYYAALRETYEEI 174

Query: 24  GF 19
           GF
Sbjct: 175 GF 176


>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -1

Query: 700 VLNAKRLTRNANLLSRRS*YLTCSQNK 620
           VL +KRL R++ + S    YLTC  NK
Sbjct: 278 VLISKRLYRSSEVASHTLTYLTCVANK 304


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,335,157
Number of Sequences: 5004
Number of extensions: 57221
Number of successful extensions: 89
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 633513876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)