Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_C02
         (1180 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0534 - 4635122-4635380,4635716-4635837                           31   1.8  
01_01_1034 + 8181373-8181484,8182810-8183384,8185410-8185468,818...    29   9.4  

>08_01_0534 - 4635122-4635380,4635716-4635837
          Length = 126

 Score = 31.1 bits (67), Expect = 1.8
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +2

Query: 104 AGVAWARCDGRRRPATSLGLWTGRATDVTR 193
           +GV W  C GR    +++G WTG A + TR
Sbjct: 71  SGVKWKSCGGRTGSRSAVGRWTG-AVEATR 99


>01_01_1034 +
           8181373-8181484,8182810-8183384,8185410-8185468,
           8185785-8185878
          Length = 279

 Score = 28.7 bits (61), Expect = 9.4
 Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = -2

Query: 222 ARLSGRES-SRRVTSVARPVQRPSDVAGRRRPSHRAHATPATCWGGRVAR 76
           ++L GRE  +RR   +A P +RP      RRP        A  WGG V R
Sbjct: 84  SKLHGREQRARRRPDLAAPRRRPGSREELRRPCDSVQ-LQAGGWGGGVGR 132


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,903,291
Number of Sequences: 37544
Number of extensions: 392706
Number of successful extensions: 1188
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1187
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3608253564
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)