Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP26_F_C01
(1142 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0116 - 907995-908813,909002-909286 35 0.10
07_01_0999 + 8426276-8426447,8426801-8426961 31 2.2
02_02_0270 + 8431503-8431830,8431961-8432149,8434288-8434412,843... 31 2.2
08_02_0386 - 16575636-16575698,16575799-16575858,16575947-165762... 30 3.0
04_01_0580 - 7539208-7539328,7539409-7539579,7539658-7540024,754... 30 3.0
10_01_0167 + 1876793-1877402,1877423-1877642,1877760-1879534,188... 29 5.2
01_01_0431 + 3271839-3273192,3273481-3275148,3275346-3275416 29 5.2
12_02_0723 - 22532379-22532902,22533060-22533135,22533195-225333... 29 6.9
12_02_0722 - 22521909-22521932,22522291-22522419,22522976-225242... 29 6.9
12_02_0534 - 20103908-20105897,20106314-20107116 29 6.9
09_04_0324 - 16686872-16687074,16687479-16687521,16687735-166880... 29 6.9
12_02_0720 - 22510996-22512949,22513752-22514533 29 9.1
01_01_0707 - 5453933-5454619 29 9.1
>06_01_0116 - 907995-908813,909002-909286
Length = 367
Score = 35.1 bits (77), Expect = 0.10
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = -1
Query: 917 LKSVIFHPXRHPHQPPLAVHEPAATITIASRVEPWGATFSADHIQRV 777
L S++ H HQPP+ PAA + V P AT S +Q+V
Sbjct: 50 LASLLLSRHHHHHQPPVLAANPAADVAAGEAVPPATATASRRFLQKV 96
>07_01_0999 + 8426276-8426447,8426801-8426961
Length = 110
Score = 30.7 bits (66), Expect = 2.2
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +3
Query: 798 AKGRPPRFDSACNGDSGSGLVDGEGRL--VGVASWVENDAFECRNG 929
AKGR R D G+ G G DGEG + +G + ND EC G
Sbjct: 57 AKGREVRVDETRIGNGGGGTYDGEGVVGCIGDSIGGTND-IECEGG 101
>02_02_0270 +
8431503-8431830,8431961-8432149,8434288-8434412,
8434527-8434703,8434798-8434871,8434978-8435713
Length = 542
Score = 30.7 bits (66), Expect = 2.2
Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Frame = +3
Query: 615 KVATLDDQPNLP--IGVDVGYAGYGTDEHGGVMRKDMHAMELSTQSDEVCSKLEQYNSLD 788
KVA + QP +G G+G D GGV+ K H++ S + +L+ +
Sbjct: 234 KVANMASQPGSSGTVGSKKRKWGFGVDPTGGVLTKGTHSLTSSPDNAPTSGRLKPMRFMS 293
Query: 789 MICAKGRP 812
AK P
Sbjct: 294 KSKAKAAP 301
>08_02_0386 - 16575636-16575698,16575799-16575858,16575947-16576239,
16576361-16576517,16576601-16576948,16577047-16577177,
16577417-16577882,16578425-16579132
Length = 741
Score = 30.3 bits (65), Expect = 3.0
Identities = 24/82 (29%), Positives = 33/82 (40%)
Frame = -1
Query: 1016 LVGCVKNLNXXDLSDPVPRXGDPGEDDQVSVAALKSVIFHPXRHPHQPPLAVHEPAATIT 837
++G ++ + +LSDP + G S A V FH HP P E I
Sbjct: 79 VLGIIRKVRSLELSDPRTPSPNGGGGSSSSSTATARVPFHLPIHPPPPEREEEEEKKGI- 137
Query: 836 IASRVEPWGATFSADHIQRVVL 771
R PW A + D +VVL
Sbjct: 138 --RRAVPWAA--ARDEETKVVL 155
>04_01_0580 -
7539208-7539328,7539409-7539579,7539658-7540024,
7540093-7540516
Length = 360
Score = 30.3 bits (65), Expect = 3.0
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +3
Query: 276 KTQSDVKAVHERFPHAVLFGGTCGGSIISPKWI-LTAGH 389
+T++D KA+HE P GG S+++PK + L GH
Sbjct: 125 RTEADSKAIHEPPPMKKRRGGKVNASLLAPKKLDLDKGH 163
>10_01_0167 +
1876793-1877402,1877423-1877642,1877760-1879534,
1880019-1880199,1881313-1881529
Length = 1000
Score = 29.5 bits (63), Expect = 5.2
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = -2
Query: 805 PLAQIISRELYCSNLEHTSSDCVDSSMACISLRITPPCSSVP 680
PL++I SR L+C + T D + +S I C +P
Sbjct: 332 PLSEIHSRRLFCQRIFSTDEDGCPDILQEVSTDILKKCGGIP 373
>01_01_0431 + 3271839-3273192,3273481-3275148,3275346-3275416
Length = 1030
Score = 29.5 bits (63), Expect = 5.2
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = +3
Query: 258 VTTEFTKTQSDVKAVHERFPHAVL--FGGTCGGSIISPKWILTAGHCTLFTNGHYVLAG 428
+TT SD+ + E VL +GG+ G ++S WI + H T G+Y +G
Sbjct: 346 LTTVEASMNSDILLIRELHWLEVLRLYGGSGQGKLVSFSWIGSLKHLTYLELGNYNFSG 404
>12_02_0723 -
22532379-22532902,22533060-22533135,22533195-22533380,
22533459-22534323,22534740-22534918,22535168-22535542
Length = 734
Score = 29.1 bits (62), Expect = 6.9
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = -2
Query: 808 RPLAQIISRELYCSNLEHTSSDCVDSSMACISLRITPPCSSVP 680
+PL+ SR+L+C + ++ DC + + ++ +I C VP
Sbjct: 236 KPLSDDDSRQLFCKRIFDSNDDC-PADLCGVTEKILKKCGGVP 277
>12_02_0722 -
22521909-22521932,22522291-22522419,22522976-22524242,
22524659-22525461
Length = 740
Score = 29.1 bits (62), Expect = 6.9
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = -2
Query: 808 RPLAQIISRELYCSNLEHTSSDCVDSSMACISLRITPPCSSVP 680
+PL+ SR+L+C + ++ DC + + ++ +I C VP
Sbjct: 319 KPLSDDDSRQLFCKRIFDSNDDC-PADLCGVTEKILKKCGGVP 360
>12_02_0534 - 20103908-20105897,20106314-20107116
Length = 930
Score = 29.1 bits (62), Expect = 6.9
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = -2
Query: 808 RPLAQIISRELYCSNLEHTSSDCVDSSMACISLRITPPCSSVP 680
+PL+ SR+L+C + ++ DC + + ++ +I C VP
Sbjct: 319 KPLSDDDSRQLFCKRIFDSNDDC-PADLCGVTEKILKKCGGVP 360
>09_04_0324 -
16686872-16687074,16687479-16687521,16687735-16688068,
16688190-16688854
Length = 414
Score = 29.1 bits (62), Expect = 6.9
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +3
Query: 693 HGGVMRKDMHAMELSTQSDEVCSKLEQYNSLDMICAKG 806
H GV+ + MEL ++D ++L +++S +CA+G
Sbjct: 188 HEGVVARSYSVMELVLEADSNKAQLWEFSSASGVCAEG 225
>12_02_0720 - 22510996-22512949,22513752-22514533
Length = 911
Score = 28.7 bits (61), Expect = 9.1
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = -2
Query: 808 RPLAQIISRELYCSNLEHTSSDCVDSSMACISLRITPPCSSVP 680
+PL+ SR+L+C + ++ DC + ++ +I C VP
Sbjct: 312 KPLSNDDSRQLFCKRIFDSNDDC-PGDLCGVTEKILKKCGGVP 353
>01_01_0707 - 5453933-5454619
Length = 228
Score = 28.7 bits (61), Expect = 9.1
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = -1
Query: 995 LNXXDLSDPVPRXGDPGEDDQVSVAALKSVIFHPXRHPHQPPLAVHEPAA 846
LN DL+ +PR D + AAL +V+ H +HP PAA
Sbjct: 99 LNFPDLAPALPRPASLAPRDVQAAAALAAVMHH-HKHPSSSTSTSSPPAA 147
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,098,265
Number of Sequences: 37544
Number of extensions: 543576
Number of successful extensions: 1508
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1505
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3468127212
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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