Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_C01
         (1142 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    46   6e-07
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   3.8  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   6.7  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 46.0 bits (104), Expect = 6e-07
 Identities = 52/227 (22%), Positives = 96/227 (42%), Gaps = 13/227 (5%)
 Frame = +3

Query: 333 GGTCGGSIISPKWILTAGHCTLFTNGH--YVLAG----TNKSDDQSGIIRYVKRMVIHPL 494
           G  CG +IIS +++LTA HC +  N     ++ G    ++K++  + ++  + +++IHP 
Sbjct: 185 GMICGATIISKRYVLTAAHCIIDENTTKLAIVVGEHDWSSKTETNATVLHSINKVIIHPK 244

Query: 495 FSVGPYWLDVEDFNLKQVAARWDFXXXXXXXXXXXDGKTIKVATLDDQPNLP--IGVDVG 668
           + +    ++ +D+ +  +A                 G  +  A L  Q  L    G DV 
Sbjct: 245 YDI----IEKDDWQINDIA-------LLKTEKDIKFGDKVGPACLPFQHFLDSFAGSDVT 293

Query: 669 YAGYGTDEHGGVMRKDMHAMELSTQSDEVCSKLEQYNSLDMICAKGRPPRFDSACNGDSG 848
             G+G     G++   +    L+  +   C K      ++ +CA  +      AC  DSG
Sbjct: 294 VLGWGHTSFNGMLSHILQKTTLNMLTQVECYKYYGNIMVNAMCAYAKG---KDACQMDSG 350

Query: 849 SGLVDGEGRL-----VGVASWVENDAFECRNGNLVVFSRVSXARDWI 974
             ++    R      +G+ SW   +  +  NGN  V S +    DWI
Sbjct: 351 GPVLWQNPRTKRLVNIGIISW-GAECGKYPNGNTKVGSYI----DWI 392


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.4 bits (48), Expect = 3.8
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +3

Query: 324 VLFGGTCGGSIISPKWILTA-GHCTLFTNGHYVL 422
           VL G TC GS I   W+  A     +F+ G ++L
Sbjct: 575 VLAGATCLGSSIKAMWLRRALASLMVFSLGLFLL 608


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.6 bits (46), Expect = 6.7
 Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
 Frame = -1

Query: 908 VIFHPXRHPHQPPLAVHEPAATITIASRVEPW-GATFSADHIQRVVLL*FRTYFVGL 741
           V FH  RH     + V+ P   + + S V  W     +AD +   +       F+GL
Sbjct: 205 VYFHLQRHMGNFLIQVYGPCVLLVVLSWVSFWLNREATADRVSLGITTVLTMTFLGL 261


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 257,566
Number of Sequences: 438
Number of extensions: 5387
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 38680821
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)