Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_B24
         (1208 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit Prp1|...    27   5.2  
SPBC649.04 |uvi15||UV-induced protein Uvi15|Schizosaccharomyces ...    27   6.9  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    24   8.6  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    26   9.1  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   9.1  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   9.1  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    26   9.1  

>SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit
           Prp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 906

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +3

Query: 198 PRYSDLDEEDQHLFRAAYDTPSYDHEEQEDNEI 296
           PRY D D E      A + T  YDHE++E ++I
Sbjct: 65  PRYQDPDNEV-----ALFATAPYDHEDEEADKI 92


>SPBC649.04 |uvi15||UV-induced protein Uvi15|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 87

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 13/33 (39%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
 Frame = +3

Query: 492 YQPTPSHPQY--EQYAGPQYGAPQHGYDPYYGH 584
           Y P P    Y    Y  PQ   PQ GY P  G+
Sbjct: 12  YAPAPPQQAYGGPNYYPPQQNYPQQGYAPPQGY 44


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 574

 Score = 23.8 bits (49), Expect(2) = 8.6
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -1

Query: 1028 PPPPPPP 1008
            PPPPPPP
Sbjct: 311  PPPPPPP 317



 Score = 20.6 bits (41), Expect(2) = 8.6
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = -1

Query: 1022 PPPPPXP 1002
            PPPPP P
Sbjct: 337  PPPPPPP 343


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
            Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -1

Query: 1028 PPPPPPPXP 1002
            PPPPPPP P
Sbjct: 306  PPPPPPPPP 314


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -1

Query: 1028 PPPPPPPXP 1002
            PPPPPPP P
Sbjct: 189  PPPPPPPPP 197


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -1

Query: 1028 PPPPPPPXP 1002
            PPPPPPP P
Sbjct: 775  PPPPPPPPP 783


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1841

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -1

Query: 1028 PPPPPPPXP 1002
            PPPPPPP P
Sbjct: 945  PPPPPPPPP 953



 Score = 23.4 bits (48), Expect(2) = 9.9
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -1

Query: 1025 PPPPPPXP 1002
            PPPPPP P
Sbjct: 907  PPPPPPLP 914



 Score = 20.6 bits (41), Expect(2) = 9.9
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = -1

Query: 1028 PPPPPPP 1008
            P PPPPP
Sbjct: 905  PTPPPPP 911


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,297,120
Number of Sequences: 5004
Number of extensions: 56671
Number of successful extensions: 324
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 653435696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)