Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP26_F_B24
(1208 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 36 0.043
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 36 0.043
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 36 0.043
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 33 0.11
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 33 0.11
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 33 0.11
AC024847-11|AAO21416.1| 453|Caenorhabditis elegans Ground-like ... 26 0.55
AC024847-10|AAF60859.1| 393|Caenorhabditis elegans Ground-like ... 26 0.56
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 26 0.85
U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin cyt... 30 2.9
U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin cyt... 30 2.9
Z81592-1|CAB04725.1| 695|Caenorhabditis elegans Hypothetical pr... 25 3.3
Z81086-9|CAD30440.1| 75|Caenorhabditis elegans Hypothetical pr... 30 3.8
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 30 3.8
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 30 3.8
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 36.3 bits (80), Expect = 0.043
Identities = 19/59 (32%), Positives = 19/59 (32%)
Frame = -3
Query: 1185 PPXXGXXXPXXPXPXXXGXXXXXXXGXXXXXPXXXXPPXPXGXGXXXXXXXKXPPPPPP 1009
PP G P P P G G P PP P G PPPPPP
Sbjct: 247 PPLAGSGSP--PPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPP 303
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 36.3 bits (80), Expect = 0.043
Identities = 19/59 (32%), Positives = 19/59 (32%)
Frame = -3
Query: 1185 PPXXGXXXPXXPXPXXXGXXXXXXXGXXXXXPXXXXPPXPXGXGXXXXXXXKXPPPPPP 1009
PP G P P P G G P PP P G PPPPPP
Sbjct: 268 PPLAGSGSP--PPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPP 324
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 36.3 bits (80), Expect = 0.043
Identities = 19/59 (32%), Positives = 19/59 (32%)
Frame = -3
Query: 1185 PPXXGXXXPXXPXPXXXGXXXXXXXGXXXXXPXXXXPPXPXGXGXXXXXXXKXPPPPPP 1009
PP G P P P G G P PP P G PPPPPP
Sbjct: 253 PPLAGSGSP--PPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPP 309
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 33.1 bits (72), Expect = 0.40
Identities = 18/64 (28%), Positives = 18/64 (28%)
Frame = -3
Query: 1200 GXPXXPPXXGXXXPXXPXPXXXGXXXXXXXGXXXXXPXXXXPPXPXGXGXXXXXXXKXPP 1021
G P PP P P G G P PP G PP
Sbjct: 711 GGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPP 770
Query: 1020 PPPP 1009
PPPP
Sbjct: 771 PPPP 774
Score = 27.1 bits (57), Expect(2) = 0.11
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = -1
Query: 1028 PPPPPPPXPXXXK 990
PPPPPPP P K
Sbjct: 769 PPPPPPPPPGGFK 781
Score = 26.6 bits (56), Expect(2) = 0.11
Identities = 15/58 (25%), Positives = 15/58 (25%)
Frame = -1
Query: 1181 PXXXXXXPXPPXXXXXGXXXXXXXXXGXXXPKXXXXXXPXGXGXXXXXXXXPPPPPPP 1008
P P PP G P P G PPPPPPP
Sbjct: 707 PPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPP 764
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 33.1 bits (72), Expect = 0.40
Identities = 18/64 (28%), Positives = 18/64 (28%)
Frame = -3
Query: 1200 GXPXXPPXXGXXXPXXPXPXXXGXXXXXXXGXXXXXPXXXXPPXPXGXGXXXXXXXKXPP 1021
G P PP P P G G P PP G PP
Sbjct: 711 GGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPP 770
Query: 1020 PPPP 1009
PPPP
Sbjct: 771 PPPP 774
Score = 27.1 bits (57), Expect(2) = 0.11
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = -1
Query: 1028 PPPPPPPXPXXXK 990
PPPPPPP P K
Sbjct: 769 PPPPPPPPPGGFK 781
Score = 26.6 bits (56), Expect(2) = 0.11
Identities = 15/58 (25%), Positives = 15/58 (25%)
Frame = -1
Query: 1181 PXXXXXXPXPPXXXXXGXXXXXXXXXGXXXPKXXXXXXPXGXGXXXXXXXXPPPPPPP 1008
P P PP G P P G PPPPPPP
Sbjct: 707 PPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPP 764
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 33.1 bits (72), Expect = 0.40
Identities = 18/64 (28%), Positives = 18/64 (28%)
Frame = -3
Query: 1200 GXPXXPPXXGXXXPXXPXPXXXGXXXXXXXGXXXXXPXXXXPPXPXGXGXXXXXXXKXPP 1021
G P PP P P G G P PP G PP
Sbjct: 294 GGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPP 353
Query: 1020 PPPP 1009
PPPP
Sbjct: 354 PPPP 357
Score = 27.1 bits (57), Expect(2) = 0.11
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = -1
Query: 1028 PPPPPPPXPXXXK 990
PPPPPPP P K
Sbjct: 352 PPPPPPPPPGGFK 364
Score = 26.6 bits (56), Expect(2) = 0.11
Identities = 15/58 (25%), Positives = 15/58 (25%)
Frame = -1
Query: 1181 PXXXXXXPXPPXXXXXGXXXXXXXXXGXXXPKXXXXXXPXGXGXXXXXXXXPPPPPPP 1008
P P PP G P P G PPPPPPP
Sbjct: 290 PPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPP 347
>AC024847-11|AAO21416.1| 453|Caenorhabditis elegans Ground-like (grd
related) protein16, isoform b protein.
Length = 453
Score = 26.2 bits (55), Expect(2) = 0.55
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = -1
Query: 1028 PPPPPPPXP 1002
PPPPPPP P
Sbjct: 64 PPPPPPPAP 72
Score = 25.0 bits (52), Expect(2) = 0.55
Identities = 9/18 (50%), Positives = 9/18 (50%)
Frame = -1
Query: 1061 GXGXXXXXXXXPPPPPPP 1008
G G PPPPPPP
Sbjct: 52 GGGSYAAAPALPPPPPPP 69
>AC024847-10|AAF60859.1| 393|Caenorhabditis elegans Ground-like (grd
related) protein16, isoform a protein.
Length = 393
Score = 26.2 bits (55), Expect(2) = 0.56
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = -1
Query: 1028 PPPPPPPXP 1002
PPPPPPP P
Sbjct: 64 PPPPPPPAP 72
Score = 25.0 bits (52), Expect(2) = 0.56
Identities = 9/18 (50%), Positives = 9/18 (50%)
Frame = -1
Query: 1061 GXGXXXXXXXXPPPPPPP 1008
G G PPPPPPP
Sbjct: 52 GGGSYAAAPALPPPPPPP 69
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 26.2 bits (55), Expect(2) = 0.85
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = -1
Query: 1028 PPPPPPPXP 1002
PPPPPPP P
Sbjct: 1338 PPPPPPPPP 1346
Score = 24.2 bits (50), Expect(2) = 0.85
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = -1
Query: 1025 PPPPPPXPXXXK 990
PPPPPP P K
Sbjct: 1356 PPPPPPPPTMSK 1367
Score = 24.2 bits (50), Expect(2) = 4.0
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = -1
Query: 1025 PPPPPPXPXXXK 990
PPPPPP P K
Sbjct: 1390 PPPPPPLPSEEK 1401
Score = 23.8 bits (49), Expect(2) = 4.0
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -1
Query: 1028 PPPPPPP 1008
PPPPPPP
Sbjct: 1357 PPPPPPP 1363
>U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform b
protein.
Length = 781
Score = 30.3 bits (65), Expect = 2.9
Identities = 16/62 (25%), Positives = 16/62 (25%)
Frame = -3
Query: 1194 PXXPPXXGXXXPXXPXPXXXGXXXXXXXGXXXXXPXXXXPPXPXGXGXXXXXXXKXPPPP 1015
P PP G P P PP P G PPPP
Sbjct: 575 PPPPPSSGTRGIAPSRPLPQAPNYGTPENRPHAVPPPPPPPPPQSFGMAPISSAAPPPPP 634
Query: 1014 PP 1009
PP
Sbjct: 635 PP 636
>U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform a
protein.
Length = 607
Score = 30.3 bits (65), Expect = 2.9
Identities = 16/62 (25%), Positives = 16/62 (25%)
Frame = -3
Query: 1194 PXXPPXXGXXXPXXPXPXXXGXXXXXXXGXXXXXPXXXXPPXPXGXGXXXXXXXKXPPPP 1015
P PP G P P PP P G PPPP
Sbjct: 401 PPPPPSSGTRGIAPSRPLPQAPNYGTPENRPHAVPPPPPPPPPQSFGMAPISSAAPPPPP 460
Query: 1014 PP 1009
PP
Sbjct: 461 PP 462
>Z81592-1|CAB04725.1| 695|Caenorhabditis elegans Hypothetical protein
T16G1.1 protein.
Length = 695
Score = 25.0 bits (52), Expect(2) = 3.3
Identities = 9/20 (45%), Positives = 9/20 (45%)
Frame = -1
Query: 1067 PXGXGXXXXXXXXPPPPPPP 1008
P G PPPPPPP
Sbjct: 521 PSSSGSGSNRRSGPPPPPPP 540
Score = 23.4 bits (48), Expect(2) = 3.3
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = -1
Query: 1025 PPPPPPXP 1002
PPPPPP P
Sbjct: 534 PPPPPPPP 541
>Z81086-9|CAD30440.1| 75|Caenorhabditis elegans Hypothetical
protein F53B6.9 protein.
Length = 75
Score = 29.9 bits (64), Expect = 3.8
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +3
Query: 507 SHPQYEQYAGPQYGAPQHGYDPYYG 581
SH + + G YG GY PYYG
Sbjct: 31 SHEHHHHHHGGYYGGGYGGYQPYYG 55
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical protein
C08B11.5 protein.
Length = 388
Score = 29.9 bits (64), Expect = 3.8
Identities = 19/79 (24%), Positives = 21/79 (26%)
Frame = -1
Query: 1028 PPPPPPPXPXXXKXXXXXXXXXXXXPXXXGFPXXXXXXPXXPXKXXFSPXFXXGXXXXXP 849
PPPPPPP P G P P P + P
Sbjct: 297 PPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYP 356
Query: 848 SXFSXLXPXXPPXRGXPXP 792
S + P PP R P
Sbjct: 357 SAGPGMYPPPPPSRPPAPP 375
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA binding
protein protein.
Length = 398
Score = 29.9 bits (64), Expect = 3.8
Identities = 19/79 (24%), Positives = 21/79 (26%)
Frame = -1
Query: 1028 PPPPPPPXPXXXKXXXXXXXXXXXXPXXXGFPXXXXXXPXXPXKXXFSPXFXXGXXXXXP 849
PPPPPPP P G P P P + P
Sbjct: 307 PPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYP 366
Query: 848 SXFSXLXPXXPPXRGXPXP 792
S + P PP R P
Sbjct: 367 SAGPGMYPPPPPSRPPAPP 385
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,876,499
Number of Sequences: 27780
Number of extensions: 409516
Number of successful extensions: 4959
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2754
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3328592102
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -