Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_B24
         (1208 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   3.1  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    24   3.1  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       23   7.1  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    23   7.1  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -1

Query: 1028 PPPPPPP 1008
            PPPPPPP
Sbjct: 1355 PPPPPPP 1361



 Score = 23.8 bits (49), Expect = 3.1
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -1

Query: 1028 PPPPPPP 1008
            PPPPPPP
Sbjct: 1356 PPPPPPP 1362



 Score = 23.4 bits (48), Expect = 4.1
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -1

Query: 1025 PPPPPPXP 1002
            PPPPPP P
Sbjct: 1355 PPPPPPPP 1362


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +3

Query: 204 YSDLDEEDQHLFRAAYDTPSYDHEEQE 284
           Y    +EDQH   A   T SYD+   E
Sbjct: 109 YPPFWDEDQHRLYAQIKTGSYDYPSPE 135


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -1

Query: 260 GSVVCSSEQMLIFFVQIRISRHVSW 186
           GSVVCS  Q ++F ++     +V+W
Sbjct: 163 GSVVCSLPQTIVFHLETH--PNVTW 185


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = +3

Query: 123 YYSITMIAKLVIGILFLNAVSP 188
           YY++T I   ++GI+ +  + P
Sbjct: 141 YYTVTTILAAIVGIVMVLIIHP 162


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 255,352
Number of Sequences: 438
Number of extensions: 5606
Number of successful extensions: 50
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 41331843
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)