Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP26_F_B23
(1242 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0686 - 30900748-30902167,30903442-30904742 36 0.066
07_03_1160 - 24430240-24431268 31 1.9
07_01_0479 + 3606663-3607448 31 2.5
03_06_0471 + 34169562-34169892,34170121-34170347 31 2.5
12_02_0118 - 13869237-13869307,13869375-13869465,13870321-138704... 30 3.3
08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,336... 30 3.3
03_01_0515 - 3864796-3865425 30 4.3
01_05_0562 - 23307526-23307875,23308149-23308452,23308543-23308647 30 4.3
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 29 5.7
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 29 7.6
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 35.9 bits (79), Expect = 0.066
Identities = 17/40 (42%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Frame = +2
Query: 389 PPPGXXGXPXGXPSRSPXQXPPXP-GRPAGXXGXXPPKGG 505
PPP G P P + P PP P G G PPKGG
Sbjct: 346 PPPPAKGPPPPPPPKGPSPPPPPPPGGKKGGPPPPPPKGG 385
Score = 29.1 bits (62), Expect = 7.6
Identities = 15/39 (38%), Positives = 16/39 (41%)
Frame = +2
Query: 389 PPPGXXGXPXGXPSRSPXQXPPXPGRPAGXXGXXPPKGG 505
PPP P G P P + PP P P G PP G
Sbjct: 337 PPP----PPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPG 371
>07_03_1160 - 24430240-24431268
Length = 342
Score = 31.1 bits (67), Expect = 1.9
Identities = 16/60 (26%), Positives = 19/60 (31%)
Frame = +1
Query: 730 PLXQPGRLPKTXXPIPPLXKGGASPYPKLXVFXSXPXXXPPXXXWXXKPPVXPNPGPXXP 909
PL P P +PP+ K P P + P P P P P P P
Sbjct: 74 PLPNPDVPPMNKPDVPPMPKPDGPPIPPVQPCPDQPPQPKPDGPPLPNPNQPPQPNPNGP 133
>07_01_0479 + 3606663-3607448
Length = 261
Score = 30.7 bits (66), Expect = 2.5
Identities = 19/48 (39%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Frame = +2
Query: 365 VAXXXXXRPPPGXXGXPXGXPSRS-PXQXPPXPGRPAGXXGXXPPKGG 505
VA RPPPG P P P Q P PG P G PP G
Sbjct: 161 VAYPQVVRPPPGQMPPPMRPPQMPIPFQRP--PGVPPAFPGGPPPPPG 206
>03_06_0471 + 34169562-34169892,34170121-34170347
Length = 185
Score = 30.7 bits (66), Expect = 2.5
Identities = 16/40 (40%), Positives = 17/40 (42%), Gaps = 3/40 (7%)
Frame = +2
Query: 395 PGXXGXPXGXPSRSPXQXPPXPGRPAG---XXGXXPPKGG 505
PG P G PS P Q PP G P G P +GG
Sbjct: 39 PGQYPTPGGYPSAPPGQYPPAGGYPGAQYPPSGYPPSQGG 78
>12_02_0118 -
13869237-13869307,13869375-13869465,13870321-13870440,
13870668-13870795,13871159-13871270,13871719-13871817,
13871918-13871992,13872099-13872320,13873177-13874034
Length = 591
Score = 30.3 bits (65), Expect = 3.3
Identities = 16/39 (41%), Positives = 16/39 (41%)
Frame = +2
Query: 389 PPPGXXGXPXGXPSRSPXQXPPXPGRPAGXXGXXPPKGG 505
PPPG P P P Q PP RPA PP G
Sbjct: 62 PPPGARPFPGSPPP--PSQPPPPFARPAAPVQQQPPPFG 98
>08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,
33643-34147,34250-34358,34436-34548,34619-34806,
35481-36129,36169-36691,36760-36911,37042-37141,
37301-37416
Length = 1530
Score = 30.3 bits (65), Expect = 3.3
Identities = 18/60 (30%), Positives = 20/60 (33%)
Frame = +1
Query: 730 PLXQPGRLPKTXXPIPPLXKGGASPYPKLXVFXSXPXXXPPXXXWXXKPPVXPNPGPXXP 909
P P P T P PPL P P + P P PP+ P P P P
Sbjct: 1158 PPLPPSPPPATPPPPPPLSPSLPPPPPPPPLPSGPPPQPAPPPLPIQPPPIPPPPVPSSP 1217
>03_01_0515 - 3864796-3865425
Length = 209
Score = 29.9 bits (64), Expect = 4.3
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +2
Query: 389 PPPGXXGXPXGXPSRSPXQXPPXPGRPAGXXGXXPP 496
PPP P P+ SP PP P P+ PP
Sbjct: 83 PPPPPLPPPPPPPAASPPPPPPSPPPPSPVKSSPPP 118
>01_05_0562 - 23307526-23307875,23308149-23308452,23308543-23308647
Length = 252
Score = 29.9 bits (64), Expect = 4.3
Identities = 22/62 (35%), Positives = 23/62 (37%), Gaps = 2/62 (3%)
Frame = +1
Query: 730 PLXQPGRLPKTXXP--IPPLXKGGASPYPKLXVFXSXPXXXPPXXXWXXKPPVXPNPGPX 903
P +PG PK P P K G P PK P PP KP P PGP
Sbjct: 170 PKPKPGPKPKPPKPGPKPKPPKPGPKPKPKPPKPGPKPKPKPP------KPGPKPKPGPP 223
Query: 904 XP 909
P
Sbjct: 224 QP 225
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 29.5 bits (63), Expect = 5.7
Identities = 16/47 (34%), Positives = 18/47 (38%)
Frame = +2
Query: 389 PPPGXXGXPXGXPSRSPXQXPPXPGRPAGXXGXXPPKGGXXVTXKTG 529
PPP G G P+ PP P P G PP GG + G
Sbjct: 1187 PPPRGHGGVGGPPTPPGAPAPPMP--PGVPGGPPPPPGGRGLPAPPG 1231
>08_01_0375 -
3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 29.1 bits (62), Expect = 7.6
Identities = 16/39 (41%), Positives = 18/39 (46%)
Frame = +2
Query: 389 PPPGXXGXPXGXPSRSPXQXPPXPGRPAGXXGXXPPKGG 505
PPP G P P +P PP P +PA G PP G
Sbjct: 11 PPPPQGGFPPQPPPMNP-YGPPPPQQPA--YGHMPPPQG 46
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.316 0.146 0.495
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,629,952
Number of Sequences: 37544
Number of extensions: 355078
Number of successful extensions: 950
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 883
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3829445508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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