Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP26_F_B23
(1242 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 36 0.079
AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical... 33 0.42
AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like pro... 33 0.42
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 33 0.55
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 33 0.55
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 33 0.55
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 32 0.73
Z29095-2|CAD18875.1| 2056|Caenorhabditis elegans Hypothetical pr... 32 0.73
Z29095-1|CAA82353.2| 2045|Caenorhabditis elegans Hypothetical pr... 32 0.73
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 32 0.73
Z95559-1|CAB08999.1| 289|Caenorhabditis elegans Hypothetical pr... 30 3.0
Z68219-2|CAA92476.1| 300|Caenorhabditis elegans Hypothetical pr... 30 3.0
U80451-8|AAB37842.2| 288|Caenorhabditis elegans Collagen protei... 30 3.0
Z81479-3|CAB03942.1| 283|Caenorhabditis elegans Hypothetical pr... 30 3.9
Z81479-2|CAB03941.1| 283|Caenorhabditis elegans Hypothetical pr... 30 3.9
Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical pr... 30 3.9
V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein ( Caeno... 30 3.9
J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.ele... 30 3.9
AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen stru... 30 3.9
Z79694-6|CAB01958.1| 316|Caenorhabditis elegans Hypothetical pr... 29 5.2
Z79694-5|CAB01961.1| 316|Caenorhabditis elegans Hypothetical pr... 29 5.2
Z46791-4|CAA86758.1| 317|Caenorhabditis elegans Hypothetical pr... 29 5.2
AL132949-22|CAB70112.2| 603|Caenorhabditis elegans Hypothetical... 29 5.2
AF022985-12|AAB69959.1| 319|Caenorhabditis elegans Collagen pro... 29 5.2
AF022985-10|AAB69961.1| 325|Caenorhabditis elegans Collagen pro... 29 5.2
Z79596-2|CAC42251.1| 838|Caenorhabditis elegans Hypothetical pr... 29 6.8
Z79596-1|CAB01857.1| 830|Caenorhabditis elegans Hypothetical pr... 29 6.8
M25478-1|AAA27992.1| 168|Caenorhabditis elegans collagen protein. 29 6.8
L29031-1|AAB72228.2| 830|Caenorhabditis elegans dynamin protein. 29 6.8
AF167982-1|AAD50438.1| 838|Caenorhabditis elegans dynamin protein. 29 6.8
Z68215-7|CAA92453.1| 289|Caenorhabditis elegans Hypothetical pr... 29 9.0
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 29 9.0
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 29 9.0
U39745-4|AAA80446.1| 325|Caenorhabditis elegans Collagen protei... 29 9.0
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 29 9.0
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 35.5 bits (78), Expect = 0.079
Identities = 16/39 (41%), Positives = 17/39 (43%)
Frame = +2
Query: 389 PPPGXXGXPXGXPSRSPXQXPPXPGRPAGXXGXXPPKGG 505
PPP G P G P PP PG P PP+GG
Sbjct: 392 PPPSAFGAPQG-PGGPGGYGPPPPGGPGAPGSYGPPQGG 429
>AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical
protein Y113G7B.23 protein.
Length = 789
Score = 33.1 bits (72), Expect = 0.42
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = +2
Query: 389 PPPGXXGXPXGXPSRSPXQXPPXPGRPAGXXGXXPPK 499
PP G G P + PP PG+P G G PP+
Sbjct: 673 PPGGGQGPPPPPQGQQYYGGPPPPGQPYGPPGGYPPQ 709
>AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like
protein protein.
Length = 789
Score = 33.1 bits (72), Expect = 0.42
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = +2
Query: 389 PPPGXXGXPXGXPSRSPXQXPPXPGRPAGXXGXXPPK 499
PP G G P + PP PG+P G G PP+
Sbjct: 673 PPGGGQGPPPPPQGQQYYGGPPPPGQPYGPPGGYPPQ 709
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 32.7 bits (71), Expect = 0.55
Identities = 20/75 (26%), Positives = 23/75 (30%)
Frame = +2
Query: 350 GXGGEVAXXXXXRPPPGXXGXPXGXPSRSPXQXPPXPGRPAGXXGXXPPKGGXXVTXKTG 529
G G PPP G P P+ SP P P G PP + TG
Sbjct: 251 GSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTG 310
Query: 530 XXPKKKXXTKXPXKG 574
P + P G
Sbjct: 311 SLPPPQAGGSPPPAG 325
Score = 32.7 bits (71), Expect = 0.55
Identities = 21/70 (30%), Positives = 25/70 (35%), Gaps = 5/70 (7%)
Frame = +2
Query: 389 PPPGXXGXPXGXPSRSPXQXPPXPGRPAGXXGXXPPKGGXXVTXKTGXXP-----KKKXX 553
PPP G P + SP PP G P P GG TG P K++
Sbjct: 281 PPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAP 340
Query: 554 TKXPXKGQXP 583
+ P G P
Sbjct: 341 ERSPPTGSPP 350
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 32.7 bits (71), Expect = 0.55
Identities = 20/75 (26%), Positives = 23/75 (30%)
Frame = +2
Query: 350 GXGGEVAXXXXXRPPPGXXGXPXGXPSRSPXQXPPXPGRPAGXXGXXPPKGGXXVTXKTG 529
G G PPP G P P+ SP P P G PP + TG
Sbjct: 272 GSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTG 331
Query: 530 XXPKKKXXTKXPXKG 574
P + P G
Sbjct: 332 SLPPPQAGGSPPPAG 346
Score = 32.7 bits (71), Expect = 0.55
Identities = 21/70 (30%), Positives = 25/70 (35%), Gaps = 5/70 (7%)
Frame = +2
Query: 389 PPPGXXGXPXGXPSRSPXQXPPXPGRPAGXXGXXPPKGGXXVTXKTGXXP-----KKKXX 553
PPP G P + SP PP G P P GG TG P K++
Sbjct: 302 PPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAP 361
Query: 554 TKXPXKGQXP 583
+ P G P
Sbjct: 362 ERSPPTGSPP 371
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 32.7 bits (71), Expect = 0.55
Identities = 20/75 (26%), Positives = 23/75 (30%)
Frame = +2
Query: 350 GXGGEVAXXXXXRPPPGXXGXPXGXPSRSPXQXPPXPGRPAGXXGXXPPKGGXXVTXKTG 529
G G PPP G P P+ SP P P G PP + TG
Sbjct: 257 GSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTG 316
Query: 530 XXPKKKXXTKXPXKG 574
P + P G
Sbjct: 317 SLPPPQAGGSPPPAG 331
Score = 32.7 bits (71), Expect = 0.55
Identities = 21/70 (30%), Positives = 25/70 (35%), Gaps = 5/70 (7%)
Frame = +2
Query: 389 PPPGXXGXPXGXPSRSPXQXPPXPGRPAGXXGXXPPKGGXXVTXKTGXXP-----KKKXX 553
PPP G P + SP PP G P P GG TG P K++
Sbjct: 287 PPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAP 346
Query: 554 TKXPXKGQXP 583
+ P G P
Sbjct: 347 ERSPPTGSPP 356
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 32.3 bits (70), Expect = 0.73
Identities = 17/38 (44%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Frame = +2
Query: 389 PPPGXXGXPXGXPSRSPXQXPPXPGR--PAGXXGXXPP 496
PPPG P G P P PP P R P G G PP
Sbjct: 302 PPPGRTPGPPGMPGMPP---PPPPSRFGPPGMGGMPPP 336
Score = 29.1 bits (62), Expect = 6.8
Identities = 17/41 (41%), Positives = 17/41 (41%), Gaps = 5/41 (12%)
Frame = +2
Query: 389 PPPGXXGXPXGXPSRS--PXQXPPXPGR---PAGXXGXXPP 496
P PG P PS P PP PGR P G G PP
Sbjct: 279 PTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPP 319
Score = 28.7 bits (61), Expect = 9.0
Identities = 20/74 (27%), Positives = 21/74 (28%), Gaps = 2/74 (2%)
Frame = +2
Query: 761 PXPPFXPXERGGLPHTPNXXFFXPXPGXXPQXGXGXXNPXXXPTXXPXXRXXTXXXPXPE 940
P PP P P P P P P G P P P P P
Sbjct: 262 PVPPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPP 321
Query: 941 KKKXXPPXXG--PP 976
+ PP G PP
Sbjct: 322 PSRFGPPGMGGMPP 335
>Z29095-2|CAD18875.1| 2056|Caenorhabditis elegans Hypothetical
protein R10E11.1b protein.
Length = 2056
Score = 32.3 bits (70), Expect = 0.73
Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
Frame = +2
Query: 389 PPPGXXGXPXGXPSRSPXQXPPXPGRPAG----XXGXXPPKGGXXVTXKTGXXPKKK 547
PPPG G P G P S + P PG+P G G P G + G P ++
Sbjct: 207 PPPGAQGMPQGYPGVS--RGGPTPGQPMGRGAMMNGAMPRSGPMPTQGRPGIPPNQQ 261
>Z29095-1|CAA82353.2| 2045|Caenorhabditis elegans Hypothetical
protein R10E11.1a protein.
Length = 2045
Score = 32.3 bits (70), Expect = 0.73
Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
Frame = +2
Query: 389 PPPGXXGXPXGXPSRSPXQXPPXPGRPAG----XXGXXPPKGGXXVTXKTGXXPKKK 547
PPPG G P G P S + P PG+P G G P G + G P ++
Sbjct: 207 PPPGAQGMPQGYPGVS--RGGPTPGQPMGRGAMMNGAMPRSGPMPTQGRPGIPPNQQ 261
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 32.3 bits (70), Expect = 0.73
Identities = 17/38 (44%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Frame = +2
Query: 389 PPPGXXGXPXGXPSRSPXQXPPXPGR--PAGXXGXXPP 496
PPPG P G P P PP P R P G G PP
Sbjct: 312 PPPGRTPGPPGMPGMPP---PPPPSRFGPPGMGGMPPP 346
Score = 29.1 bits (62), Expect = 6.8
Identities = 17/41 (41%), Positives = 17/41 (41%), Gaps = 5/41 (12%)
Frame = +2
Query: 389 PPPGXXGXPXGXPSRS--PXQXPPXPGR---PAGXXGXXPP 496
P PG P PS P PP PGR P G G PP
Sbjct: 289 PTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPP 329
Score = 28.7 bits (61), Expect = 9.0
Identities = 20/74 (27%), Positives = 21/74 (28%), Gaps = 2/74 (2%)
Frame = +2
Query: 761 PXPPFXPXERGGLPHTPNXXFFXPXPGXXPQXGXGXXNPXXXPTXXPXXRXXTXXXPXPE 940
P PP P P P P P P G P P P P P
Sbjct: 272 PVPPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPP 331
Query: 941 KKKXXPPXXG--PP 976
+ PP G PP
Sbjct: 332 PSRFGPPGMGGMPP 345
>Z95559-1|CAB08999.1| 289|Caenorhabditis elegans Hypothetical
protein Y41E3.2 protein.
Length = 289
Score = 30.3 bits (65), Expect = 3.0
Identities = 18/50 (36%), Positives = 21/50 (42%), Gaps = 4/50 (8%)
Frame = +2
Query: 392 PPGXXGXPX--GXPSRSPXQXPPXPGRP--AGXXGXXPPKGGXXVTXKTG 529
PPG G P G P++S P PG P AG G P G + G
Sbjct: 184 PPGQAGAPGEPGSPAKSEPAVPGPPGPPGQAGQQGPPGPPGSNGIDGAPG 233
>Z68219-2|CAA92476.1| 300|Caenorhabditis elegans Hypothetical
protein T05A1.2 protein.
Length = 300
Score = 30.3 bits (65), Expect = 3.0
Identities = 17/45 (37%), Positives = 20/45 (44%)
Frame = +2
Query: 395 PGXXGXPXGXPSRSPXQXPPXPGRPAGXXGXXPPKGGXXVTXKTG 529
PG G P G P S P PG+P G G P+G + K G
Sbjct: 199 PGSQGPP-GPPGHSDEPKPGQPGQP-GRAGPRGPRGVAGIKGKDG 241
>U80451-8|AAB37842.2| 288|Caenorhabditis elegans Collagen protein
20 protein.
Length = 288
Score = 30.3 bits (65), Expect = 3.0
Identities = 14/31 (45%), Positives = 15/31 (48%)
Frame = +2
Query: 392 PPGXXGXPXGXPSRSPXQXPPXPGRPAGXXG 484
PPG G P G R + PP PG P G G
Sbjct: 163 PPGGHGEP-GPAGRGGPRGPPGPGGPQGEAG 192
>Z81479-3|CAB03942.1| 283|Caenorhabditis elegans Hypothetical
protein C34F6.3 protein.
Length = 283
Score = 29.9 bits (64), Expect = 3.9
Identities = 19/66 (28%), Positives = 22/66 (33%), Gaps = 2/66 (3%)
Frame = +2
Query: 392 PPGXXGXPX--GXPSRSPXQXPPXPGRPAGXXGXXPPKGGXXVTXKTGXXPKKKXXTKXP 565
PPG G P G P R + PP P P G G G +T P P
Sbjct: 155 PPGPPGGPGELGGPGRGGNRGPPGPRGPPGEAGPDGEGGRPGQAGQTRSAPSPPGQPGQP 214
Query: 566 XKGQXP 583
+ P
Sbjct: 215 GEPGSP 220
>Z81479-2|CAB03941.1| 283|Caenorhabditis elegans Hypothetical
protein C34F6.2 protein.
Length = 283
Score = 29.9 bits (64), Expect = 3.9
Identities = 19/66 (28%), Positives = 22/66 (33%), Gaps = 2/66 (3%)
Frame = +2
Query: 392 PPGXXGXPX--GXPSRSPXQXPPXPGRPAGXXGXXPPKGGXXVTXKTGXXPKKKXXTKXP 565
PPG G P G P R + PP P P G G G +T P P
Sbjct: 155 PPGPPGGPGELGGPGRGGNRGPPGPRGPPGEAGPDGEGGRPGQAGQTRSAPSPPGQPGQP 214
Query: 566 XKGQXP 583
+ P
Sbjct: 215 GEPGSP 220
>Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical
protein W01B6.7 protein.
Length = 301
Score = 29.9 bits (64), Expect = 3.9
Identities = 16/38 (42%), Positives = 16/38 (42%)
Frame = +2
Query: 392 PPGXXGXPXGXPSRSPXQXPPXPGRPAGXXGXXPPKGG 505
P G G P G PS PP P PAG G GG
Sbjct: 169 PDGNPGSPAG-PSGPGPAGPPGPAGPAGNDGAPGAPGG 205
>V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-2 coding for a collagen.
).
Length = 301
Score = 29.9 bits (64), Expect = 3.9
Identities = 16/38 (42%), Positives = 16/38 (42%)
Frame = +2
Query: 392 PPGXXGXPXGXPSRSPXQXPPXPGRPAGXXGXXPPKGG 505
P G G P G PS PP P PAG G GG
Sbjct: 169 PDGNPGSPAG-PSGPGPAGPPGPAGPAGNDGAPGAPGG 205
>J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 2 (col-2) gene, complete
cds. ).
Length = 301
Score = 29.9 bits (64), Expect = 3.9
Identities = 16/38 (42%), Positives = 16/38 (42%)
Frame = +2
Query: 392 PPGXXGXPXGXPSRSPXQXPPXPGRPAGXXGXXPPKGG 505
P G G P G PS PP P PAG G GG
Sbjct: 169 PDGNPGSPAG-PSGPGPAGPPGPAGPAGNDGAPGAPGG 205
>AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen
structural gene, probabledorsal and ventral cuticle
component, from embryo to adult,but maximal in dauer
(28.0 kD) (col-2) protein.
Length = 301
Score = 29.9 bits (64), Expect = 3.9
Identities = 16/38 (42%), Positives = 16/38 (42%)
Frame = +2
Query: 392 PPGXXGXPXGXPSRSPXQXPPXPGRPAGXXGXXPPKGG 505
P G G P G PS PP P PAG G GG
Sbjct: 169 PDGNPGSPAG-PSGPGPAGPPGPAGPAGNDGAPGAPGG 205
>Z79694-6|CAB01958.1| 316|Caenorhabditis elegans Hypothetical
protein C15A11.6 protein.
Length = 316
Score = 29.5 bits (63), Expect = 5.2
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +2
Query: 392 PPGXXGXPXGXPSRSPXQXPPXPGRPAGXXG 484
P G G P G P++ Q PP P PAG G
Sbjct: 152 PKGPNGNP-GAPAQGGGQGPPGPPGPAGSAG 181
>Z79694-5|CAB01961.1| 316|Caenorhabditis elegans Hypothetical
protein C15A11.5 protein.
Length = 316
Score = 29.5 bits (63), Expect = 5.2
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +2
Query: 392 PPGXXGXPXGXPSRSPXQXPPXPGRPAGXXG 484
P G G P G P++ Q PP P PAG G
Sbjct: 152 PKGPNGNP-GAPAQGGGQGPPGPPGPAGSAG 181
>Z46791-4|CAA86758.1| 317|Caenorhabditis elegans Hypothetical
protein C09G5.5 protein.
Length = 317
Score = 29.5 bits (63), Expect = 5.2
Identities = 17/58 (29%), Positives = 21/58 (36%)
Frame = +2
Query: 392 PPGXXGXPXGXPSRSPXQXPPXPGRPAGXXGXXPPKGGXXVTXKTGXXPKKKXXTKXP 565
P G G P G P+ Q PP P PAG G G + G ++ P
Sbjct: 150 PQGPNGNP-GAPAHGGGQGPPGPPGPAGDAGSPGQAGAPGNPGRPGQSGQRSRGLPGP 206
>AL132949-22|CAB70112.2| 603|Caenorhabditis elegans Hypothetical
protein Y53F4B.25 protein.
Length = 603
Score = 29.5 bits (63), Expect = 5.2
Identities = 25/80 (31%), Positives = 30/80 (37%), Gaps = 11/80 (13%)
Frame = +1
Query: 730 PLXQPG--RLPKTXXPIPPLXKGGASPYPKLXVFXSXP-XXXPPXXXWXXK------PP- 879
PL QP R P IPPL ++P P F P PP + + PP
Sbjct: 218 PLLQPSPVRFPAQPWQIPPLHPHQSTPNPLTQFFQPIPQHLIPPPNPFFPQQHQTWTPPT 277
Query: 880 -VXPNPGPXXPXXNRXXXXP 936
+ PNP P P N P
Sbjct: 278 LLQPNPIPPPPQRNESSFDP 297
>AF022985-12|AAB69959.1| 319|Caenorhabditis elegans Collagen
protein 143 protein.
Length = 319
Score = 29.5 bits (63), Expect = 5.2
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +2
Query: 392 PPGXXGXPXGXPSRSPXQXPPXPGRPAGXXG 484
P G G P G P++S + PP P PAG G
Sbjct: 150 PKGNNGQP-GAPAQSGGRGPPGPRGPAGDAG 179
>AF022985-10|AAB69961.1| 325|Caenorhabditis elegans Collagen
protein 142 protein.
Length = 325
Score = 29.5 bits (63), Expect = 5.2
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +2
Query: 392 PPGXXGXPXGXPSRSPXQXPPXPGRPAGXXG 484
P G G P G P++S + PP P PAG G
Sbjct: 150 PKGNNGQP-GAPAQSGGRGPPGPRGPAGDAG 179
>Z79596-2|CAC42251.1| 838|Caenorhabditis elegans Hypothetical
protein C02C6.1b protein.
Length = 838
Score = 29.1 bits (62), Expect = 6.8
Identities = 15/51 (29%), Positives = 17/51 (33%)
Frame = +2
Query: 386 RPPPGXXGXPXGXPSRSPXQXPPXPGRPAGXXGXXPPKGGXXVTXKTGXXP 538
+PPP PS P P P G PP+GG G P
Sbjct: 747 QPPPLPMSDYRPHPSGPSPVPRPAPAPPGGRQAPMPPRGGPGAPPPPGMRP 797
>Z79596-1|CAB01857.1| 830|Caenorhabditis elegans Hypothetical
protein C02C6.1a protein.
Length = 830
Score = 29.1 bits (62), Expect = 6.8
Identities = 15/51 (29%), Positives = 17/51 (33%)
Frame = +2
Query: 386 RPPPGXXGXPXGXPSRSPXQXPPXPGRPAGXXGXXPPKGGXXVTXKTGXXP 538
+PPP PS P P P G PP+GG G P
Sbjct: 747 QPPPLPMSDYRPHPSGPSPVPRPAPAPPGGRQAPMPPRGGPGAPPPPGMRP 797
>M25478-1|AAA27992.1| 168|Caenorhabditis elegans collagen protein.
Length = 168
Score = 29.1 bits (62), Expect = 6.8
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +2
Query: 392 PPGXXGXPXGXPSRSPXQXPPXPGRPAGXXG 484
P G G P G P++ Q PP P PAG G
Sbjct: 139 PKGPNGNP-GAPAQPGGQGPPGPPGPAGSAG 168
>L29031-1|AAB72228.2| 830|Caenorhabditis elegans dynamin protein.
Length = 830
Score = 29.1 bits (62), Expect = 6.8
Identities = 15/51 (29%), Positives = 17/51 (33%)
Frame = +2
Query: 386 RPPPGXXGXPXGXPSRSPXQXPPXPGRPAGXXGXXPPKGGXXVTXKTGXXP 538
+PPP PS P P P G PP+GG G P
Sbjct: 747 QPPPLPMSDYRPHPSGPSPVPRPAPAPPGGRQAPMPPRGGPGAPPPPGMRP 797
>AF167982-1|AAD50438.1| 838|Caenorhabditis elegans dynamin protein.
Length = 838
Score = 29.1 bits (62), Expect = 6.8
Identities = 15/51 (29%), Positives = 17/51 (33%)
Frame = +2
Query: 386 RPPPGXXGXPXGXPSRSPXQXPPXPGRPAGXXGXXPPKGGXXVTXKTGXXP 538
+PPP PS P P P G PP+GG G P
Sbjct: 747 QPPPLPMSDYRPHPSGPSPVPRPAPAPPGGRQAPMPPRGGPGAPPPPGMRP 797
>Z68215-7|CAA92453.1| 289|Caenorhabditis elegans Hypothetical
protein C53B4.5 protein.
Length = 289
Score = 28.7 bits (61), Expect = 9.0
Identities = 21/72 (29%), Positives = 24/72 (33%), Gaps = 4/72 (5%)
Frame = +2
Query: 392 PPGXXGXPXGXPSRSPX--QXPPXPGRPAGXXGXXPPKGGXXVTXKTG--XXPKKKXXTK 559
PPG G P ++ P PP P P G G P G K G P +
Sbjct: 142 PPGPAGPPGPQGNKGPLGPPGPPGPEGPNGTAGNKGPAGPPGPGGKPGPAGPPGENGRNG 201
Query: 560 XPXKGQXPXXGR 595
P G GR
Sbjct: 202 EPQPGSPGEPGR 213
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 28.7 bits (61), Expect = 9.0
Identities = 21/69 (30%), Positives = 21/69 (30%)
Frame = +2
Query: 770 PFXPXERGGLPHTPNXXFFXPXPGXXPQXGXGXXNPXXXPTXXPXXRXXTXXXPXPEKKK 949
P P GGLP P PG P G P P P P P K
Sbjct: 726 PPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCP----PPPPPPPPGGFK 781
Query: 950 XXPPXXGPP 976
PP PP
Sbjct: 782 GGPPPPPPP 790
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 28.7 bits (61), Expect = 9.0
Identities = 21/69 (30%), Positives = 21/69 (30%)
Frame = +2
Query: 770 PFXPXERGGLPHTPNXXFFXPXPGXXPQXGXGXXNPXXXPTXXPXXRXXTXXXPXPEKKK 949
P P GGLP P PG P G P P P P P K
Sbjct: 726 PPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCP----PPPPPPPPGGFK 781
Query: 950 XXPPXXGPP 976
PP PP
Sbjct: 782 GGPPPPPPP 790
>U39745-4|AAA80446.1| 325|Caenorhabditis elegans Collagen protein
173 protein.
Length = 325
Score = 28.7 bits (61), Expect = 9.0
Identities = 18/50 (36%), Positives = 19/50 (38%), Gaps = 2/50 (4%)
Frame = +2
Query: 386 RPPPGXXGX--PXGXPSRSPXQXPPXPGRPAGXXGXXPPKGGXXVTXKTG 529
R PPG G P G RS Q PP P G G G K+G
Sbjct: 253 RGPPGPAGPDGPQGPEGRSGKQGPPGPTGQEGEEGVIGEPGKPGEPGKSG 302
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 28.7 bits (61), Expect = 9.0
Identities = 21/69 (30%), Positives = 21/69 (30%)
Frame = +2
Query: 770 PFXPXERGGLPHTPNXXFFXPXPGXXPQXGXGXXNPXXXPTXXPXXRXXTXXXPXPEKKK 949
P P GGLP P PG P G P P P P P K
Sbjct: 309 PPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCP----PPPPPPPPGGFK 364
Query: 950 XXPPXXGPP 976
PP PP
Sbjct: 365 GGPPPPPPP 373
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.316 0.146 0.495
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,589,908
Number of Sequences: 27780
Number of extensions: 246862
Number of successful extensions: 1046
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 976
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3443371140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
- SilkBase 1999-2023 -