Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP26_F_B22
(1182 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23D3.03c |||GTPase activating protein |Schizosaccharomyces p... 32 0.14
SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit |Schizosa... 29 1.3
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac... 27 3.8
SPBC8E4.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 3.8
SPBC1703.04 |mlh1||MutL family protein Mlh1 |Schizosaccharomyces... 27 5.1
SPCC1020.03 |||mitochondrial iron ion transporter|Schizosaccharo... 27 5.1
SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity ... 27 6.7
SPBC28E12.02 ||SPBC9B6.13|RNA-binding protein|Schizosaccharomyce... 26 8.9
SPAC1F12.04c |||conserved fungal protein|Schizosaccharomyces pom... 26 8.9
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo... 26 8.9
>SPAC23D3.03c |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 472
Score = 32.3 bits (70), Expect = 0.14
Identities = 20/71 (28%), Positives = 38/71 (53%)
Frame = +1
Query: 706 RDDPEKAKASLVKAKTLYEDFKCTLQMPLPIEVIINYVGETLIDDFMYLEKSYTLTLYYL 885
+++PE A L+K + + +DF L L I ++ + ++D +++ E S+ + L L
Sbjct: 369 KNEPELATHLLIKLELVPDDFVYPLLRKLFIPMVSPEIASRILDCYVFEEDSFFIQL--L 426
Query: 886 AQVFGVLKXNL 918
VF +LK L
Sbjct: 427 MAVFKLLKPKL 437
>SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 589
Score = 29.1 bits (62), Expect = 1.3
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 307 ETMTREMSAKEILNDFKENYIKFRKLLDEDSKNDPENAP 423
E + + + + +F E +F LDED+ NDPE +P
Sbjct: 9 EELYKALGREYTTQEFDELCFQFGIELDEDTTNDPERSP 47
>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
Hip3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1630
Score = 27.5 bits (58), Expect = 3.8
Identities = 32/134 (23%), Positives = 61/134 (45%), Gaps = 7/134 (5%)
Frame = +1
Query: 307 ETMTREMSAKEI-LNDFKENYIKFRKLLDEDSKNDPENAPYFSK-YKAKEILNNMYVFLK 480
E + + S KE +ND ++F+ + E S D + + Y+ +++ N +Y +K
Sbjct: 1455 EDLRLQHSVKETQINDLP--LVEFKYVYKEISLLDEQKLSLLHQVYEIRKLNNGLYPTIK 1512
Query: 481 TLKTEGSPVDDTKLDAMIG-YVLLNIGIVEMDTEEP----TASEKSLNEAVDLLLENALK 645
VDD +D + Y + I +D P T + K LN+ + EN++K
Sbjct: 1513 --------VDDFLIDCFMSLYNEVKSSISPLDANIPNSPSTITAKPLNDEKAINNENSVK 1564
Query: 646 PEIVVTLINVYNNI 687
+ V+T +V + +
Sbjct: 1565 QKTVITRKDVVSKV 1578
>SPBC8E4.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 129
Score = 27.5 bits (58), Expect = 3.8
Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = +2
Query: 374 SGSYLTKTARM-ILKMRHIFLSTKLKK 451
SG Y +T R+ +LK RH LS +LKK
Sbjct: 62 SGMYTFETGRLLVLKQRHRVLSMELKK 88
>SPBC1703.04 |mlh1||MutL family protein Mlh1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 684
Score = 27.1 bits (57), Expect = 5.1
Identities = 22/82 (26%), Positives = 39/82 (47%)
Frame = +1
Query: 328 SAKEILNDFKENYIKFRKLLDEDSKNDPENAPYFSKYKAKEILNNMYVFLKTLKTEGSPV 507
S K ND K+ ++ ++++E + D E+ K K+++N+M+V + TE V
Sbjct: 423 SNKNATNDIKD--LQTEEIVEEGNSIDLESI----KSLQKQVINSMHVLATNILTEHKYV 476
Query: 508 DDTKLDAMIGYVLLNIGIVEMD 573
I V NIG+ +D
Sbjct: 477 GLVCPTRRIAAVQHNIGLYVVD 498
>SPCC1020.03 |||mitochondrial iron ion
transporter|Schizosaccharomyces pombe|chr 3|||Manual
Length = 397
Score = 27.1 bits (57), Expect = 5.1
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +1
Query: 592 SEKSLNEAVDLLLENALKPEIVVTLINVYNNIGI 693
S+K + E V L + PE+ + + +Y+NIG+
Sbjct: 54 SDKEMLELVKALKKEGKSPELKLAWLGLYSNIGL 87
>SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 408
Score = 26.6 bits (56), Expect = 6.7
Identities = 16/74 (21%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Frame = +1
Query: 301 KFETMTREMS-AKEILNDFKENYIKFRKLLDEDSKNDPENAPYFSKYKAKEILNNMYVFL 477
KF E++ A+ +L F E +K++DE+ + +++PYF + +E N + +
Sbjct: 95 KFRKSIVELAKARNMLLMFVEVVCTNQKIIDENITDMCQHSPYFKSFPFEESKNKILDSI 154
Query: 478 KTLKTEGSPVDDTK 519
+ +P+ + +
Sbjct: 155 HEYEKHYTPLSEAE 168
>SPBC28E12.02 ||SPBC9B6.13|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 663
Score = 26.2 bits (55), Expect = 8.9
Identities = 15/62 (24%), Positives = 28/62 (45%)
Frame = +1
Query: 304 FETMTREMSAKEILNDFKENYIKFRKLLDEDSKNDPENAPYFSKYKAKEILNNMYVFLKT 483
FE + EM ++ + ++I+F + E + PEN+ K + I N+ L+
Sbjct: 319 FEFLAYEMDELRLIMEENSSFIRFPEYFKEGGETSPENSKV--KIYSSSIANSEKTALRL 376
Query: 484 LK 489
K
Sbjct: 377 AK 378
>SPAC1F12.04c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 191
Score = 26.2 bits (55), Expect = 8.9
Identities = 12/47 (25%), Positives = 28/47 (59%)
Frame = +1
Query: 706 RDDPEKAKASLVKAKTLYEDFKCTLQMPLPIEVIINYVGETLIDDFM 846
R DP +K S + ++ +F+C L++P ++I+N+ ++ + +M
Sbjct: 29 RLDPASSK-STAQLVSMLNEFRCILRLPGLYKLIVNFRKDSSPETYM 74
>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1513
Score = 26.2 bits (55), Expect = 8.9
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -3
Query: 292 ISINICMRRYNXGCMML*NELQDQIQQ 212
I IC RR++ C+ L NE+ D + +
Sbjct: 1368 IDCTICERRFHYDCVGLNNEIADSVSK 1394
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,769,342
Number of Sequences: 5004
Number of extensions: 72373
Number of successful extensions: 256
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 256
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 635506058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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