Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_B22
         (1182 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nucl...    34   0.23 
Z19152-2|CAA79544.1| 1150|Caenorhabditis elegans Hypothetical pr...    29   6.4  

>AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nuclear
            anchorage protein1 protein.
          Length = 8545

 Score = 33.9 bits (74), Expect = 0.23
 Identities = 20/74 (27%), Positives = 45/74 (60%), Gaps = 3/74 (4%)
 Frame = +1

Query: 319  REMSAKEILNDFKENYIKFRKLL---DEDSKNDPENAPYFSKYKAKEILNNMYVFLKTLK 489
            ++ S +E++++     ++ + L+   +E +KN  EN P   K KA+++++N+  F+K ++
Sbjct: 3027 KKKSPQEMIDELSAKVVEAKALIPKIEEAAKN--ENLPADDKPKAEQLVSNLEAFVKDVE 3084

Query: 490  TEGSPVDDTKLDAM 531
            T+ S   D +LD +
Sbjct: 3085 TQVSEKQD-ELDKL 3097



 Score = 33.9 bits (74), Expect = 0.23
 Identities = 20/74 (27%), Positives = 45/74 (60%), Gaps = 3/74 (4%)
 Frame = +1

Query: 319  REMSAKEILNDFKENYIKFRKLL---DEDSKNDPENAPYFSKYKAKEILNNMYVFLKTLK 489
            ++ S +E++++     ++ + L+   +E +KN  EN P   K KA+++++N+  F+K ++
Sbjct: 3930 KKKSPQEMIDELSAKVVEAKALIPKIEEAAKN--ENLPADDKPKAEQLVSNLEAFVKDVE 3987

Query: 490  TEGSPVDDTKLDAM 531
            T+ S   D +LD +
Sbjct: 3988 TQVSEKQD-ELDKL 4000



 Score = 33.9 bits (74), Expect = 0.23
 Identities = 20/74 (27%), Positives = 45/74 (60%), Gaps = 3/74 (4%)
 Frame = +1

Query: 319  REMSAKEILNDFKENYIKFRKLL---DEDSKNDPENAPYFSKYKAKEILNNMYVFLKTLK 489
            ++ S +E++++     ++ + L+   +E +KN  EN P   K KA+++++N+  F+K ++
Sbjct: 4884 KKKSPQEMIDELSAKVVEAKALIPKIEEAAKN--ENLPADDKPKAEQLVSNLEAFVKDVE 4941

Query: 490  TEGSPVDDTKLDAM 531
            T+ S   D +LD +
Sbjct: 4942 TQVSEKQD-ELDKL 4954



 Score = 33.9 bits (74), Expect = 0.23
 Identities = 20/74 (27%), Positives = 45/74 (60%), Gaps = 3/74 (4%)
 Frame = +1

Query: 319  REMSAKEILNDFKENYIKFRKLL---DEDSKNDPENAPYFSKYKAKEILNNMYVFLKTLK 489
            ++ S +E++++     ++ + L+   +E +KN  EN P   K KA+++++N+  F+K ++
Sbjct: 5787 KKKSPQEMIDELSAKVVEAKALIPKIEEAAKN--ENLPADDKPKAEQLVSNLEAFVKDVE 5844

Query: 490  TEGSPVDDTKLDAM 531
            T+ S   D +LD +
Sbjct: 5845 TQVSEKQD-ELDKL 5857



 Score = 33.9 bits (74), Expect = 0.23
 Identities = 20/74 (27%), Positives = 45/74 (60%), Gaps = 3/74 (4%)
 Frame = +1

Query: 319  REMSAKEILNDFKENYIKFRKLL---DEDSKNDPENAPYFSKYKAKEILNNMYVFLKTLK 489
            ++ S +E++++     ++ + L+   +E +KN  EN P   K KA+++++N+  F+K ++
Sbjct: 6690 KKKSPQEMIDELSAKVVEAKALIPKIEEAAKN--ENLPADDKPKAEQLVSNLEAFVKDVE 6747

Query: 490  TEGSPVDDTKLDAM 531
            T+ S   D +LD +
Sbjct: 6748 TQVSEKQD-ELDKL 6760



 Score = 33.9 bits (74), Expect = 0.23
 Identities = 20/74 (27%), Positives = 45/74 (60%), Gaps = 3/74 (4%)
 Frame = +1

Query: 319  REMSAKEILNDFKENYIKFRKLL---DEDSKNDPENAPYFSKYKAKEILNNMYVFLKTLK 489
            ++ S +E++++     ++ + L+   +E +KN  EN P   K KA+++++N+  F+K ++
Sbjct: 7593 KKKSPQEMIDELSAKVVEAKALIPKIEEAAKN--ENLPADDKPKAEQLVSNLEAFVKDVE 7650

Query: 490  TEGSPVDDTKLDAM 531
            T+ S   D +LD +
Sbjct: 7651 TQVSEKQD-ELDKL 7663


>Z19152-2|CAA79544.1| 1150|Caenorhabditis elegans Hypothetical
           protein B0464.2 protein.
          Length = 1150

 Score = 29.1 bits (62), Expect = 6.4
 Identities = 18/66 (27%), Positives = 32/66 (48%)
 Frame = +1

Query: 568 MDTEEPTASEKSLNEAVDLLLENALKPEIVVTLINVYNNIGILWSNRDDPEKAKASLVKA 747
           ++  +P  S +    A+DLL+ N    E +     + NN+G L+ +    EKA+    +A
Sbjct: 442 LEATDPKRSLELYENAIDLLVTN----ESIQPQPEMLNNVGALYMSMKQYEKAEHHFKRA 497

Query: 748 KTLYED 765
           K   E+
Sbjct: 498 KERLEE 503


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,459,808
Number of Sequences: 27780
Number of extensions: 389466
Number of successful extensions: 1054
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1004
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1054
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3234681980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)