Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_B22
         (1182 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    27   0.43 
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    24   3.0  
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    23   5.2  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    23   5.2  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    23   5.2  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 26.6 bits (56), Expect = 0.43
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +1

Query: 370 KFRKLLDEDSKNDPENAPYFSKYKAKEILNNMYVFLKTL 486
           KF + +DE + ND +   + +K  A   LN++Y    TL
Sbjct: 366 KFPRNIDEYNNNDLDTKKWNNKISALRALNDLYNVKNTL 404


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 23.8 bits (49), Expect = 3.0
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = -2

Query: 584 GSSVSISTIPMFNKTYPIIASSLVSSTGEPSVFKVFKKTYILFNISLA 441
           G+   I+ I  F K  P+  S++    G PS++  + K  +  NIS+A
Sbjct: 15  GTKSEINDIVGFLKKGPL-DSNVEVVVGVPSIYLTYAKNILPNNISIA 61


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 23.0 bits (47), Expect = 5.2
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = +1

Query: 484 LKTEGSPVDDTKLDAMIGYVLLNIGIVEMDTEEPTASEKSLNE 612
           +   G   +   L   +G   L +G+ +MD+ EP  SE    E
Sbjct: 54  ISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSETRFEE 96


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 23.0 bits (47), Expect = 5.2
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = +1

Query: 484 LKTEGSPVDDTKLDAMIGYVLLNIGIVEMDTEEPTASEKSLNE 612
           +   G   +   L   +G   L +G+ +MD+ EP  SE    E
Sbjct: 70  ISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSETRFEE 112


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 5.2
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = +1

Query: 484 LKTEGSPVDDTKLDAMIGYVLLNIGIVEMDTEEPTASEKSLNE 612
           +   G   +   L   +G   L +G+ +MD+ EP  SE    E
Sbjct: 127 ISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSETRFEE 169


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 249,970
Number of Sequences: 438
Number of extensions: 4851
Number of successful extensions: 20
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 40247334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)