Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_B21
         (1216 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC713.03 |||D-lactate dehydrogenase |Schizosaccharomyces pombe...    28   3.0  
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   6.9  
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma...    26   9.2  

>SPBC713.03 |||D-lactate dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 526

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
 Frame = +3

Query: 744 NGGLMDNAFKYIKDNGGIDTEQTY----PYEGVDDKCR-YNPKNTGAEDVGFVDIP 896
           +G ++DN     KDN G+D +Q +     Y GV  K     PK   + +V F  +P
Sbjct: 229 DGTILDNLVTLRKDNTGLDIKQLFIGSEGYLGVITKLSVICPKRPSSTNVAFFGVP 284


>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 452

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -1

Query: 610 FPWSLMSVTAPCFLQSTCSGSFTLAGDMN 524
           +PWS   V    +L     G F LAGD N
Sbjct: 399 YPWSQPVVNITDYLSDNGDGHFVLAGDGN 427


>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 358

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
 Frame = +3

Query: 687 SLSEQ--NLIDCSEQYGNNGCNGGLMDNAFKYIKDNGGIDTEQTYPYEG 827
           SL EQ  NL+    QY     NG +      Y   N   +T + YPY G
Sbjct: 28  SLQEQDENLLAACPQYITIYTNGPVPGTTTIYPTSNVASNTSENYPYTG 76


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,012,709
Number of Sequences: 5004
Number of extensions: 79628
Number of successful extensions: 246
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 246
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 657420060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)