Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_B21
         (1216 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   4.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   4.1  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    23   7.1  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   7.1  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   7.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   7.1  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   9.4  
AF487333-1|AAL93262.1|   80|Apis mellifera integrin betaPS protein.    22   9.4  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -1

Query: 382 PISYFWLCLAMMCLCSAYIFM 320
           P+SY     A M +C+ ++FM
Sbjct: 300 PVSYLKAVDAFMSVCTVFVFM 320


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = +2

Query: 395 QAGHEQVRRHAPPRVREDYERLQQNCQTQQESVHEGWER 511
           Q+ H Q +  A P+ ++  ++ Q   Q QQ+   +  +R
Sbjct: 818 QSTHPQAQAQAQPQQQQQQQQQQPQQQQQQQQQQQQQQR 856


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +3

Query: 528 ISPANVKLPEQVDWRK 575
           + P+N KLP   +W+K
Sbjct: 385 LDPSNRKLPAPANWKK 400


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = -1

Query: 949 ETGPTVATASISFCSSPSGMSTKPTSSAPV 860
           +  P   +A +S   SP+G    P++ AP+
Sbjct: 388 QVSPVSMSALVSAVRSPAGGQLPPSAGAPM 417


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -1

Query: 1012 LLVVDSAGVELEAGVRGVDGHETGPT 935
            L+ V +A     AG  G D H  GP+
Sbjct: 6    LIFVGAAAAVTSAGGHGFDAHLRGPS 31


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -1

Query: 1012 LLVVDSAGVELEAGVRGVDGHETGPT 935
            L+ V +A     AG  G D H  GP+
Sbjct: 6    LIFVGAAAAVTSAGGHGFDAHLRGPS 31


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +3

Query: 420 DMLHHEFVKTMNGFNKTAKHNKNLYMKGG 506
           D   H+ +   NG + T  HN+ L   GG
Sbjct: 395 DSARHQRIGGCNGLHTTTAHNRFLGGIGG 423


>AF487333-1|AAL93262.1|   80|Apis mellifera integrin betaPS protein.
          Length = 80

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = +3

Query: 879 GFVDIPEGDEQKLMEAVATVGPVSW 953
           G +D PEG    +M+A+     + W
Sbjct: 53  GNLDAPEGGFDAIMQAIVCRRQIGW 77


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 277,129
Number of Sequences: 438
Number of extensions: 5985
Number of successful extensions: 69
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 41572845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)