Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_B20
         (1197 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    25   1.00 
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    22   9.3  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    22   9.3  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    22   9.3  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 25.4 bits (53), Expect = 1.00
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = +2

Query: 545 PSLRRGRCPTPSRERERCPSHRPVPFARRSRTRAKKPTRRKSRK 676
           P + R   P+   ERE   S +P P    S++      R++S K
Sbjct: 341 PCILRMSRPSDKEEREAQKSQKPSPVTGASKSHGDLELRQRSSK 384


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -3

Query: 778 YTKLTNKPYSTPIQYLESVSRG 713
           Y  ++  P  TP Q+ +SVS G
Sbjct: 408 YQTMSRDPARTPFQWDDSVSAG 429


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = +1

Query: 535 GVLTITAPRKVPDAVKGERKVPIAQTGPVRKEIKDQSEEAN 657
           G  T T      D +  E  +PI +TG   K I ++ E  N
Sbjct: 141 GKSTTTTVEVKRDIINPEDVIPIRRTGEGSKPIFEREEIKN 181


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -3

Query: 778 YTKLTNKPYSTPIQYLESVSRG 713
           Y  ++  P  TP Q+ +SVS G
Sbjct: 408 YQTMSRDPARTPFQWDDSVSAG 429


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 265,283
Number of Sequences: 438
Number of extensions: 5301
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 40849839
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)